Pseudomonas frederiksbergensis: PFAS1_20725
Help
Entry
PFAS1_20725 CDS
T04786
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03030
DNA replication
pfk03410
Base excision repair
pfk03420
Nucleotide excision repair
pfk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFAS1_20725
03410 Base excision repair
PFAS1_20725
03420 Nucleotide excision repair
PFAS1_20725
03430 Mismatch repair
PFAS1_20725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfk03032
]
PFAS1_20725
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_20725
Enzymes [BR:
pfk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFAS1_20725
DNA replication proteins [BR:
pfk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFAS1_20725
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFAS1_20725
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFAS1_20725
MMR (mismatch excision repair)
DNA ligase
PFAS1_20725
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFAS1_20725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
zf-FPG_IleRS
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
APV41660
LinkDB
All DBs
Position
4462342..4464699
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKNRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAAHPELITSDSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQISA
DIADTHIGNLKQLKVWGMPISHELKLAHGIAECLDYYRDIGERRNSLPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVIERRPDNARPVQIPEKCPVCGS
HVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYALTFEQIVDLEGFAELSSKNLLSAIEDSKKPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIKNLLKHGL
QIQDQGELGAEFSASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEGVFSADWLDMRQAL
PEKQATSVREFFAVAQNRQIAEAAEKQLRDFGMHWQSEKKVVEGLPLAGQTWVLTGSLEL
MSRDIAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVDFLKK
HGISV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaaaccgcattttagagctgcgcgctgaactcgatcagcacaactat
cgctaccacgtgctggacgagccgagcattccggacgccgaatacgaccggttgttccac
gagctcaaggccctcgaagcggcccatcccgaactgatcaccagcgactcgccaacccag
cgcgtcggcagtgcggcgctgtcggcgttcactcaggtgcgtcacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaaccgacatgcgcgagttcgatcggcgggtaaccgaa
ggtctcgacctgccggtgggcgacttgttcggcggcggcgcggcggtggaatacagctgt
gaacccaaactcgatggcctggcggtcagtttgttgtatcaggatggcgtattggtgcgc
ggcgcgactcgtggcgacggcaccaccggcgaagacatcagcgtcaatgtccgtaccgtg
cgcaacattccgctcaagctgcacggtacgggctggccagcgaccctggaagtgcgcggc
gaagtgttcatgtccaaggccggtttcgagcgcctcaacgccacgcagctggaagtcggc
ggcaagactttcgccaatccgcgcaacgcggcggcgggtagcttgcgccagctcgattcg
aagatcaccgccaaccgtccgctggagttctgctgctatggcctcggtcagatttcggcc
gacattgcggatacgcacattggcaatctcaagcagctcaaggtttggggcatgccgatc
agccatgagttgaaactggctcacggcatcgctgaatgcctggattattaccgcgacatc
ggtgagcgccgaaattcgctgccctacgaaatcgacggcgtcgtgttcaaggtcaacagc
attgcctctcagcgtgagctgggcttccgtgctcgcgaaccgcgctgggcgatcgcgcac
aaattcccggcgatggaagaactcactgagttgcttgatgtggaattccaggtcggtcgt
accggtgcagtgacgcctgtggcgcgcttgaagccggtcaaggtcgcgggtgtgaccgtg
gctaatgcgacgttgcacaacatggacgaagtggcgcgcctgggcctgatgattggcgac
accgtgatcatccgtcgcgcgggcgatgtgattccgcaagtggtgcaagtggtcatcgag
cgccgtccggacaacgcacggccagtacagattcccgagaaatgcccggtctgcggctcg
catgtcgagcgcacgcaactggtcaagcgcagcaaaggtcgcgagaccgtcagcgagggc
gcggtgtaccgctgcgtcggtcgtctggcctgcggtgcgcaactcaagcaggccatcatt
cacttcgtctctcgccgcgccatggacatcgaaggcctgggggagaagagcgtcgagcaa
ctggtggacgaagggctggtgagttcgccggctgatttgtacgcgctgacgttcgaacag
attgtcgatctggaaggctttgccgagttgtcgagcaagaacttgctcagcgccatcgaa
gacagcaagaagccaagcctggcgcgcttcatctacgccctcggaatcccggatgtcggc
gaagagacggcgaaggtactggcgcgttctctcggctcgctggagcgggttcagcaagcc
ttgccgcaagtgcttacgtatttgccggatgtgggcctggaagtcgctcatgagattcac
agcttctttgaagatgcgcataaccagcaggtgatcaagaatctgctcaagcacggcctg
caaattcaggatcagggagaacttggtgccgagttttccgccagcactacgttgggtggc
ttcctcgacaagctgcacatcccttcggtcgggccgggcggggcgcagaagctggcggac
aagtttggttcgcttgaaggtgttttcagcgccgactggctggatatgcgccaggcactg
ccggaaaaacaggccacttcggtccgggagttttttgcggttgcgcaaaatcgccagatt
gccgaagccgccgagaaacagctgcgcgatttcggcatgcattggcagagcgagaagaaa
gtcgtcgaaggcttgccgctggccgggcagacctgggtgctgaccggttcgctggagttg
atgagccgcgacatcgccaaggacaaacttgaaagcctcggtgccaaggtggcgggctct
gtgtcggccaagacccattgtgtggtggcagggccgggtgcaggttccaagttgacgaag
gctaatgagctgggattgaaagtgctcgatgaagaagcgtttgtcgacttcctgaaaaaa
cacggtatttctgtttag
DBGET
integrated database retrieval system
