Pseudomonas protegens Pf-5: PFL_4850
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Entry
PFL_4850 CDS
T00249
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PFL_4850 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_4850 (nth)
Enzymes [BR:
pfl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PFL_4850 (nth)
DNA repair and recombination proteins [BR:
pfl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PFL_4850 (nth)
Prokaryotic type
PFL_4850 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Ogg-HhH
HHH_5
HHH_8
DUF2400
Motif
Other DBs
NCBI-ProteinID:
AAY94080
UniProt:
Q4K752
LinkDB
All DBs
Position
5594352..5594990
Genome browser
AA seq
212 aa
AA seq
DB search
MNAAKRLEIFRRLHEDNPEPKTELAYSSPFELLIAVILSAQSTDVGVNKATAKLFPVANT
PAAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHNSEVPQTREELEALPGVGRK
TANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVEVEKKLMKFVPKEFLLDSHHWLI
LHGRYVCLARKPRCGSCRIEDLCEYKQKTSDD
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgccaaacgcctggaaatctttcgccggctacacgaagacaaccccgaaccg
aaaaccgagctggcctattcctcgccgttcgagctgctgattgcggtgattctctcggcg
caatcgaccgacgtcggagtcaacaaggcgactgccaagctcttccccgtagccaacacc
ccagcggcaatctacgccctgggtgtcgaaggcctgtccgaatacatcaagaccatcggc
ctgtacaacagcaaggccaagaacgtcatcgagacctgccgcctgctggtggaacgccat
aacagcgaagtgccacagacccgggaagagctggaggctctgcccggggtgggccgcaag
accgccaacgtggtcctcaacaccgctttccggcaactgaccatggcggtggacacccat
atcttccgggtcagcaaccgaaccgggctggccccgggaaagaacgtggtcgaggtcgaa
aagaaactcatgaagttcgtgcccaaggagtttctgctggactcccatcactggctgatc
ctccacggccgctacgtttgcctggcacgcaagccacgctgtggcagctgtcgaatcgaa
gacctgtgcgaatacaagcaaaagacttccgacgattga
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