Pseudomonas protegens Pf-5: PFL_5066
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Entry
PFL_5066 CDS
T00249
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl00300
Lysine biosynthesis
pfl00550
Peptidoglycan biosynthesis
pfl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PFL_5066
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PFL_5066
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pfl01011
]
PFL_5066
Enzymes [BR:
pfl01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
PFL_5066
Peptidoglycan biosynthesis and degradation proteins [BR:
pfl01011
]
Precursor biosynthesis
Amino acid ligase
PFL_5066
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
CBP_BcsQ
Motif
Other DBs
NCBI-ProteinID:
AAY94294
UniProt:
Q4K6I8
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All DBs
Position
complement(5828668..5830131)
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AA seq
487 aa
AA seq
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MSLSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAVA
YEVEGATVLPLTDVPLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVA
QALDLLGQRCGLVGTLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSHG
LDQGRVAALAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWNDLRCRVINLDDDFGRQ
LAADKHESRLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFNLSNV
LAAVGALLGLEYALDEILAVLPKLEGPAGRMQRLGGGTQPLVVVDYAHTPDALEKVLLAL
RPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDDIRAGF
SAAEKVEFVAGRGLAIARLIASASADDVVVLAGKGHEDYQEINGQRHDFSDLAEADKALT
AWEVGHA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttagcctaaacaagattttcgcccacgccggtcgcgacctgctgattcgtgag
ttgaccctggacagccgtaacgtgcgggccggggacctgtttcttgcggtgcccggcgcc
aagttcgatgggcgtgcgcacattgccgatgccctgcagcgcggcgctgccgcggtggct
tatgaagtggaaggggcaactgtgttgccgctgaccgatgtaccgctgattccggtcaag
ggcctggcggcgcagctgtcggacatagccgggcgcttctatggtgacccgagccgccag
ttgaacctggtgggcgtgaccggcaccaacggcaagaccagcgttacccaactggtggct
caggccctggacctgctgggccagcgttgtggcctggtaggtaccctggggaccgggttt
catggcgcgctgcaaagcgggatgcacaccacgccgaacccgattgccgtgcaggccacc
ctggcagacctgaagaatgcaggagccaaggcggtggccatggaggtctcgtcccatggc
ctggatcaggggcgcgtggcggcactggctttcgatgtggcggtgctgaccaacctgtcc
cgtgaccatctggattaccacgggaccatggaagcctatggcgcagccaaggccaagctc
tttgcctggaacgacctgcgttgccgggtgatcaacctcgacgacgattttggccggcaa
ctggcggcggacaaacatgagtcacgactgatcacttacagcctcgaagacgccgctgct
tatctgtactgccgcgaagcgcgttttgacgatgatggcgtgcgcgcgaccctggtgacc
ccgcagggtgagcaccacctgcgcagttgcctgctcgggcgcttcaacctgagcaacgtg
ctggctgcggtaggtgcgttgttgggtcttgaatacgcgctggacgaaattcttgcggtc
ctgcccaagcttgaaggccccgccggacgcatgcagcgcctgggtggcggtactcagccg
ctggtggtggtggattacgcccacaccccggatgccctggaaaaagtcttgctggccctg
cgtccgcatgccaagggccgcctgctgtgcctgttcggttgtggcggcgaccgggaccgc
ggcaagcgtccgttgatggctgaggtggtcgagcgtctggccgacggcgtgctggtgact
gatgacaacccacgcagcgaagacccggcccaaatcttcgacgatattcgtgccggtttc
agcgcggcagaaaaggtggaattcgtagccggtcgcgggctggccattgctcgcctgatc
gcttccgcgtcggccgatgacgtggtggtgctggccggtaaaggccatgaggattaccag
gaaataaacggccagcgacatgatttttctgatctcgccgaggcggacaaagccttgacc
gcgtgggaggtgggccatgcttaa
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