Pseudomonas protegens Pf-5: PFL_5789
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Entry
PFL_5789 CDS
T00249
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase adenylation domain protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03030
DNA replication
pfl03410
Base excision repair
pfl03420
Nucleotide excision repair
pfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFL_5789 (ligA)
03410 Base excision repair
PFL_5789 (ligA)
03420 Nucleotide excision repair
PFL_5789 (ligA)
03430 Mismatch repair
PFL_5789 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_5789 (ligA)
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_5789 (ligA)
Enzymes [BR:
pfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFL_5789 (ligA)
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFL_5789 (ligA)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFL_5789 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFL_5789 (ligA)
MMR (mismatch excision repair)
DNA ligase
PFL_5789 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFL_5789 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AAY94979
UniProt:
Q4K4I6
LinkDB
All DBs
Position
6596455..6598125
Genome browser
AA seq
556 aa
AA seq
DB search
MLPRAVVLLSLTPFFAQAACPDWPVPRATDEITALQQQLQRWDSSYYRDGRSLVADELYD
QARQRLLTWRQCFPQAPRAMDQPLLGAGGSIRHPIPHTGVEKLADANAVTGWLKGRDDIW
AQPKVDGVAVTLIYHRGQFQQALSRGDGVHGHDWTRAAWQIEAIPKRLPRPVDLLLQGEL
YLRLEQHVQARSGSLKARNRVAGWMARKQLTAAEAAQIGLFVWDWPQGPATLSERLEQLA
DLGFAEPREYSRPVGGFADAQQWRARWYRSPLPFASDGIILRQSRRPAAERWQAKAPYWI
AAWKYPYAQVLASVRQVDFRIGRTGRITPLLEIEPVTLDDRQIRRVSLGSLQRWRSLDIV
PGDQVAISLAGLSIPRLDEVVLRSTLRQSIQPPREADFHFLSCWQPSPGCEEQFLARLTW
LSSKQGLNLQNIGSRTWARLVETGRIKGLLDWLTLDQAELANIAGFGDRSSKRLLESLHS
ARQQPFPRWLKALGIPPSGSADLSGPWQALAMKNSLDWQNEAGIGAERAAQLVAFFRAPE
VLALQGALNSAGIEGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgctgccaagagccgttgtgctgctgagcctcactccattcttcgcccaggccgcctgc
cccgactggccggttccccgtgccaccgatgaaatcaccgccctgcagcagcaactgcag
cgctgggatagcagctattaccgtgacggccgatcactggtggcggatgagctctacgat
caggcccgccagcgcctgctcacctggcgccagtgcttccctcaggctccccgggcaatg
gaccagcccctgctcggcgccgggggcagcatccgccaccccatcccccacacgggggtg
gaaaaactcgccgatgccaatgccgtgacggggtggctcaagggccgcgacgacatctgg
gcgcaacccaaggtcgacggcgtagcggtgaccctgatctaccaccgggggcagttccag
caagcactcagccgtggcgacggcgtgcatggccatgactggacccgtgcagcctggcaa
atcgaggccatacccaaacgactgccacggcccgtcgacctgttgctgcaaggagagctc
tatctgcgcctggagcagcatgtccaggctcgctccggcagcctcaaggcgcgcaaccgg
gtggcaggctggatggctcgcaaacagctgacagcggcggaggccgcgcagatcgggctg
tttgtctgggactggccccagggcccggctacattgagcgaacgcctggaacaactggca
gacctgggttttgccgaaccccgcgagtacagccgacccgtaggcggcttcgccgatgca
caacagtggcgggcccgctggtatcgctcgccactgccctttgccagtgacggcatcatc
ctgcggcaaagccggcgtcccgccgccgaacgctggcaggccaaggccccatactggatt
gccgcctggaagtacccctacgcccaggtgctggccagcgttcgtcaagtcgattttcgt
atcggccgcacggggcgcatcacgcccctgctggagatcgagccggtgaccctggacgac
cggcagatccgccgtgtcagtctcggctcactgcaacgctggcgatccctggatatcgtt
cccggcgatcaggtagccatcagtctcgccgggttgagcatcccgcgcctggatgaagtg
gtactcagaagcaccctgcgccaaagcatccagcccccgcgagaagccgactttcacttc
ctgagttgctggcagccatcacccggctgcgaggaacaatttctggcccgactgacctgg
ctcagcagcaaacaaggcctgaacctgcagaatatcggcagccggacctgggcccggctg
gttgaaacaggccgtatcaaaggcctgctggattggctgaccctggatcaggcagagctt
gctaacattgccggctttggtgatcgcagcagcaagcgtttgctcgagagcctgcacagc
gccaggcaacagcccttcccacgctggctcaaagccctcggcatcccgcccagtggctcg
gccgacctgagcgggccatggcaggccctggccatgaaaaacagcctggactggcagaat
gaagccggtatcggagcggagcgggccgcacaactggtggcgttttttcgcgctccagag
gtcctggccttgcaaggcgccctgaacagcgccggtatcgaaggtttttag
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