Phytohabitans flavus: Pflav_039130
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Entry
Pflav_039130 CDS
T06516
Symbol
ligA2
Name
(GenBank) DNA ligase 2
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfla
Phytohabitans flavus
Pathway
pfla03030
DNA replication
pfla03410
Base excision repair
pfla03420
Nucleotide excision repair
pfla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pflav_039130 (ligA2)
03410 Base excision repair
Pflav_039130 (ligA2)
03420 Nucleotide excision repair
Pflav_039130 (ligA2)
03430 Mismatch repair
Pflav_039130 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfla03032
]
Pflav_039130 (ligA2)
03400 DNA repair and recombination proteins [BR:
pfla03400
]
Pflav_039130 (ligA2)
Enzymes [BR:
pfla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pflav_039130 (ligA2)
DNA replication proteins [BR:
pfla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pflav_039130 (ligA2)
DNA repair and recombination proteins [BR:
pfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pflav_039130 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pflav_039130 (ligA2)
MMR (mismatch excision repair)
DNA ligase
Pflav_039130 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pflav_039130 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
UPF0758_N
DNA_ligase_ZBD
DUF7575
Motif
Other DBs
NCBI-ProteinID:
BCB77503
UniProt:
A0A6F8XUJ5
LinkDB
All DBs
Position
4242134..4244215
Genome browser
AA seq
693 aa
AA seq
DB search
MRDLVDPIDPVVDAAEATPFPDVEEYRAAVERIRAAAEAYYSGPDLAMDDATYDGLMARV
AATEAVHPEWKAADSPTEAVGAGGGVVGDIEHSEPMLSLENVFGADELHKWAARLEKIVG
RPVAGYTVEPKIDGLAIAARYTDGVLTLVATRGDGRAGEDVTAQARRAKGLPARLREPVT
VEVRGEVFMTDEDFAEAQVLRTGAGEPAFAHPRSAAAGTLRAPKRVYEAPLSFFAYSAHG
VAEPTAHSAAMEWLSDLGVATTAYTLCGTVDEVYTAVEALTATRGTLGFGVDGAVVKADQ
PADRAAAGSSTRAPRWGVAYKFPADTRTTKLLRIEVQVGRTGVITPVAVLEPVQVGGVIV
TSATLHNFEDLVRRNVRAGDTVFVRRAGDVIPEVTGAQLDLRPADSVPFEPPADCPRCGG
EIDRSQKRWRCTQGRACGAGVALEYYVARNSMDIEGLGDKILHAVVAAGLVTDPADLYDL
DVPTLAALERLGEVSATKLVTNIQGSKARPLSRVLTALGVRMTGRSMSRRLAGHFGTMDA
LLAASVDELQRVDGVGPERAVTIAAELVELTPLIARLAERGVNMTEPVDAPAAAGTGGMP
LQRPDGTPMTVVVTGSVPGLTRDEGNEAVEKLGGKPSGSVSKKTDLVVVGDGAGSKATKA
EQLGIRVLPAERFAALLKAHEDGDPDAVAEILA
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcgagacctggtggatccgatcgatccggtcgtggacgcggcggaggcgacgccgttc
ccggacgtcgaggagtaccgcgcggcggtcgagcggatccgggccgccgccgaggcgtac
tacagcggccctgacctggcgatggacgacgcgacgtacgacgggctgatggcccgggtc
gccgccaccgaggccgtccacccggagtggaaggcggccgactcccccaccgaggccgtc
ggcgcgggtggcggcgtggtcggcgacatcgagcacagcgagccgatgctcagcctcgaa
aacgtcttcggcgccgacgagctgcacaagtgggccgcgcggctggagaagatcgtgggt
cgcccagtcgccgggtacacggtcgagccgaagatcgacgggctggccatcgcggcccgg
tacaccgacggggtcctgaccttggtggcgacgcgcggtgacgggcgcgcgggcgaggac
gtgaccgcccaggcccgccgcgccaagggcctgccggcgcggctgcgcgagccggtgacg
gtcgaggtgcgcggcgaggtcttcatgaccgacgaggacttcgccgaagcgcaggtgctg
cgcaccggggcgggcgagccggcgttcgcgcatccgcgcagcgccgcggcgggcaccctc
cgcgcaccgaagcgggtgtacgaggcgccgctctccttcttcgcgtactccgcgcacggc
gtcgccgagccgacggcgcactcggccgcgatggagtggctctcggatcttggcgtggcc
accaccgcctacacgctctgcgggacggtcgacgaggtgtacacggcggtcgaggcgctc
accgccacccgcggcacgctcggcttcggggtggacggcgcggtggtgaaggccgaccag
cccgccgaccgggccgcggccggctcgtccacccgcgcgccgaggtggggcgtggcgtac
aagtttccggccgacacccgtaccaccaagctgctccgcatcgaggtgcaggtggggcgc
acgggtgtgatcacgccggtcgccgtgctggagccggtacaggtcggcggcgtgatcgtc
acctcggccacgctgcacaacttcgaggacctggtacgccgcaacgtccgcgccggcgac
acggtcttcgtccgccgggccggcgacgtgatccccgaggtcaccggcgcccagctggac
ctgcgcccggcggactcggtgccgttcgagccgccggccgactgcccgcgctgcggcggc
gagatcgaccgttcacagaagcggtggcggtgcacccagggccgggcctgcggtgccggg
gtcgcgctcgagtactacgtcgcccgtaactccatggacatcgaggggctcggcgacaag
atcctgcacgcggtggtcgccgcggggctggtcaccgaccccgccgacctgtacgacctg
gacgtgcccaccctcgccgcgctcgaacggctcggcgaggtctccgccaccaagctggtc
accaacatccagggctccaaggcccggccgctgtcgcgggtgctgaccgccctgggcgta
cggatgacgggccgctcgatgtcgaggcggctggccggccacttcggcaccatggacgcg
ctgctcgccgcctcggtggacgagttgcaacgggtggacggcgtgggccccgagcgggcg
gtgacgatcgccgccgagcttgtcgagctgaccccgctcatcgcccgcctcgccgagcgc
ggcgtcaacatgaccgagcccgtcgacgccccggccgccgccggtaccggtggaatgccg
ctgcaacgcccggacggtacgccgatgacggtggtggtgaccggctcggtgcccggcctg
acccgcgacgagggcaacgaggcggtggagaagctgggcggcaagccgtccggctcggtg
tcgaagaagaccgacctggtggtggtcggcgacggcgccggctccaaggccacgaaggcc
gagcagctgggcatccgcgtcctgcccgcggagcggttcgccgccctcctgaaggcccac
gaggacggcgaccccgacgcggtggcggagatcctggcctag
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