Pseudoalteromonas maricaloris SCSIO 43202: CTT31_14985
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Entry
CTT31_14985 CDS
T08529
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Pathway
pfli03030
DNA replication
pfli03410
Base excision repair
pfli03420
Nucleotide excision repair
pfli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTT31_14985 (ligA)
03410 Base excision repair
CTT31_14985 (ligA)
03420 Nucleotide excision repair
CTT31_14985 (ligA)
03430 Mismatch repair
CTT31_14985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfli03032
]
CTT31_14985 (ligA)
03400 DNA repair and recombination proteins [BR:
pfli03400
]
CTT31_14985 (ligA)
Enzymes [BR:
pfli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CTT31_14985 (ligA)
DNA replication proteins [BR:
pfli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CTT31_14985 (ligA)
DNA repair and recombination proteins [BR:
pfli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CTT31_14985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTT31_14985 (ligA)
MMR (mismatch excision repair)
DNA ligase
CTT31_14985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTT31_14985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
USE70349
LinkDB
All DBs
Position
1:complement(3374311..3376329)
Genome browser
AA seq
672 aa
AA seq
DB search
MSDNIESQVAALRQQLEDYNYQYYVLDNPSVPDAEYDRVMRQLMALEQQHPELQSPDSPS
QKVGGEALSKFEQVTHRVPMLSLDNAFDESEFTAFNRRLKERLLTSKDVTFCCEPKLDGL
AVSILYRDGVLVQAATRGDGQVGENITENVKTIRNIPLKLRGEHIPHEVEVRGEVFMDTA
GFIKLNEAAQAKGDKTFANPRNAAAGSLRQLDSKITAKRPLMFYAYSMGLVEGGELANEH
YAQLQQLQGWGLPMSPETKLVDNAQQALAYYQDIMTRRAELPYEIDGVVIKVNDKAQQEQ
LGFVARAPRWAIAFKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NGDEIARLGVKIGDTVIVRRAGDVIPQVTQVVLDRRPDDAKEIEFPDTCPVCDSHVERVE
GEAVARCTGGLVCRAQRKEAIKHFASRKALDIDGLGDKIVEQLVERELIKTPADLFILKQ
GHFESLERMGPKSAKNLVAALEEAKQTTLAKFLYSLGIREVGEATAQNLANHFQTLEKVM
AASIDTLQQVSDVGVVVAQHIHSFFAEQHNQEVVTALIEVGVTWQDVAAPSEDTQPLAGL
TYVLTGTLSQLNRNDAKARLQALGAKVAGSVSKNTDAVYAGEKAGSKLTKAQELGVEVFD
EEALIALLNKYE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaacattgaaagccaagttgcagctcttaggcagcaactcgaagattacaat
taccaatattatgttttagataacccaagtgtgcctgatgcggaatatgatcgtgtgatg
cgccagttgatggcgcttgagcagcagcatcctgagttacaaagtcctgattccccatcg
cagaaagtgggtggtgaagcgcttagcaagtttgagcaagtaacacacagagtacctatg
ttgtcgcttgataatgccttcgacgagagtgaatttacggcatttaatcgccgtttaaaa
gagcgcctactgacaagtaaagatgttactttttgctgtgaaccaaagctcgatggcttg
gcggtgtctattttgtatcgtgatggtgtgctcgttcaagcggcgacaaggggagacggt
caagttggggaaaacatcactgagaacgtcaaaaccattcgcaatattccgctgaaactg
cgtggagaacatattccgcatgaagtagaagtgcgtggtgaagtttttatggatactgcg
ggtttcattaagctaaatgaagcggcgcaagcgaaaggtgataagacctttgcaaaccca
agaaatgcggcagcgggaagtctgcgccaattagactcaaaaattaccgctaagcgtccg
ttgatgttttatgcttattctatgggcttggttgaaggcggtgagctggcaaacgagcat
tatgcgcagctacagcaattacaaggttggggcttgccaatgagccctgagacaaagctt
gtcgataatgcacagcaagctttggcttattatcaagatatcatgacgcgccgtgctgag
cttccctatgaaattgatggcgtagtgatcaaagtgaatgataaagcgcagcaagagcag
cttggttttgttgctcgcgcgccgcgctgggcgattgcatttaagttccctgcacaagaa
gagatcactcagctgcttgatgttgagtttcaggtcggtcgtactggtgctatcacgccc
gttgcacgtttagagcctgtttttgttggtggtgttacggtatcgaatgccacgcttcat
aatggtgatgaaattgcgcggttaggtgtaaagattggtgataccgttattgtacgccga
gctggggatgtgatccctcaggtaactcaggtcgttttagataggcgtcctgatgatgcc
aaagagattgagttcccagatacttgtccggtgtgtgattctcatgttgaacgtgttgaa
ggagaagcggttgcgcgttgtactggcggtttagtgtgccgtgcacaacgtaaagaagca
attaagcactttgcatcgagaaaggccctcgacatagatgggcttggcgacaaaatagtt
gagcagttagttgagcgagagcttatcaagacgcctgctgatttgtttatcttaaagcag
ggccattttgagtctcttgaacgtatggggccaaagtctgctaaaaacttggttgcggcg
cttgaagaagcaaagcaaacaacgttagccaaatttttgtattcgcttgggatcagagaa
gtcggtgaagcgacagcacaaaacttggcaaatcacttccagacgcttgaaaaagtgatg
gccgcctccattgatactctacagcaagtaagtgatgttggtgttgttgttgcgcagcac
attcatagcttttttgccgagcagcataatcaagaagtggtaactgcattgatagaagtg
ggtgtaacttggcaagatgttgcagcaccgtcagaggatacacaacctttagcagggcta
acttatgtattgactggaaccttgagccaattgaaccgcaacgatgctaaagcgagattg
caagcgcttggcgctaaggtcgcgggtagtgtgtcgaaaaatacggatgcagtttatgcc
ggcgaaaaagcaggctctaagctcactaaggcacaagagctaggtgttgaggtgttcgat
gaagaagcgctgatcgcactgttaaacaaatacgagtag
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integrated database retrieval system
