Perca flavescens (yellow perch): 114548467
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Entry
114548467 CDS
T07494
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03440
Homologous recombination
pflv03460
Fanconi anemia pathway
pflv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114548467 (brca1)
09124 Replication and repair
03440 Homologous recombination
114548467 (brca1)
03460 Fanconi anemia pathway
114548467 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pflv01009
]
114548467 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pflv04121
]
114548467 (brca1)
03036 Chromosome and associated proteins [BR:
pflv03036
]
114548467 (brca1)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114548467 (brca1)
Enzymes [BR:
pflv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114548467 (brca1)
Protein phosphatases and associated proteins [BR:
pflv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114548467 (brca1)
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114548467 (brca1)
Multi subunit type E3
BRCC complex
114548467 (brca1)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
114548467 (brca1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
114548467 (brca1)
BRCA1-A complex
114548467 (brca1)
BRCA1-B complex
114548467 (brca1)
BRCA1-C complex
114548467 (brca1)
BRCA complex
114548467 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
114548467 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
RTT107_BRCT_5
zf-Nse
zf-RING_5
zf-RING_4
zf-MIZ
zf-ANAPC11
PTCB-BRCT
zf-RING_10
TRAF3_RING
zf-PARP
YicC-like_C
Rad50_zn_hook
Baculo_IE-1
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
114548467
NCBI-ProteinID:
XP_028424240
LinkDB
All DBs
Position
21:complement(13450603..13472709)
Genome browser
AA seq
1467 aa
AA seq
DB search
MTMKTPMAIDVKKGISVLWETLQCPICLDLMTAPVSTNCDHQFCKFCMMKLLDNTKQNRA
TCPVCKTKITKRSLQESPGFQRLITGLQDMIQAYEHDTGTNYLTGMSQQKGQSGVTDVED
AEHCHDMSFGNTPGNVEIVDNDDLSRSHSSTIAARNGFARLMELEDTSPLMTENEGLDSG
LGEAPPTSDKRMCSPIDNMEPLETEMSEVVKIATSIHKTRGNKQFHKLEKASPCASLIPD
ETEHQPLRKSSRKKQKTDLESDKILKEKQKKSLEKVAEWLMNVPTEGSLELEKPNEDTDD
SDSCSSTSTIDVKQHNSDVNPGRVDRAKALEEQVFGAVYKRERRGTRVVSPPLNVFVKPS
TTKDTQTVSKRRRNAITPADFFKKTGSEGKSASDMEEEQQRLEEVNDTSSDIFKEAEHIE
AMKKNYIDKYEEESNNFPESDKNNGKDEVSCPVFDIGQQLPDRKSKTSTRNSLQQVDSDL
QEQAKANSESTEQKKTDKRKGKNTRLEKAKPARVPKPLVLVGVKNGEASPKTRPRSGEVQ
VHIENYPSSEDQETPVVRSTRRSRRLQLFTEEIQERHKKANLKANKAEKNGNVGKQSEEA
EDGTLDNTASPSTNVNMTKVAERNGCIYDQDIEEIENMESDERTSYMRPTEDVKKSLAEV
QNAETLSEASAACSVTVVPSSTSSTEAAVVEQTLERDNPTNHLPNNIQLETFPSLRKCAG
TENEEDNNDSELDTEQLLKSFKAIKRKSFHLGGSNLKRSRGLDQENLQGAEAQENQRLCS
SVESAKNWMYTKASEVTNQEALGDNKNSSCSDLISPSFSHAPTRKPVVEKPDHMVVEASI
PGSSQDSAGGNCVSNSVSSTLTPNKVSKREIESPHLSVVSRVVDSGLCFTVAEREEPNEP
SNYSQITEKQLDATERGAGRGRAIRDSISECHSAAIGIHSVNTAEHVLNAECSLTPDGLG
IPVVQIVHEAQSDSHGSGELSANSSINSMPRKRTRAQRLDSSLESDDSEEGLPTLTEIFG
TSALPSAVTKELDGSSEANRCEDATVWGAKQLSRPPACPSPDCVNSSQASVDLFGTPDEC
DVPVNDVSVPSQIESSQFSSEVLVTQQKIEMQKELVRLEKLMALVTEVLQEKEGSPAEEV
SSKTIQSSKTTGPDPHIPLPCDQDRGQGSDWKAVPEEEREPSTRPSDGKEVIQPSGSKHG
STAEMAVQRSTHTGPSVKGTGGSKTPSSSSAAKTLKSDGSPPDGQEDKENNTPPRDRSKA
KMVLVSSGLGPNEQIMVKRFAKRVGARVVSQVTAEVTHVIMHTDEQLVCERTLKYFLGIA
GRKWVVSFQWISECFKLKKLLDESVFEVRGDVVNGPSHQGPMRARTTEDNNLLLKGYTIC
FQGPFTDMTTDEMEWMVELCGAALVKDPLLLDSKQKSHQLVIVQPGSESSSSSTYSSLSR
QATVVTRGWLLDTVATYTLQNYNKYTT
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgaaaaccccaatggccatcgatgtcaaaaaagggatttcagtcctttgggag
actctgcagtgtcccatatgcttggatttaatgactgcacctgtatctactaactgtgac
catcagttttgcaaattttgtatgatgaaacttttggacaacaccaaacaaaacagggct
acttgtccagtgtgtaaaaccaagataaccaaaaggagcttgcaggagagccctgggttt
cagagacttataacaggactgcaggacatgatacaggcatatgaacatgacactggcaca
aactacttaactggaatgtcccagcaaaaaggacaatcgggtgtcacagatgttgaagat
gctgaacattgtcatgatatgtcatttggaaatacacctggcaatgtggaaattgtcgac
aatgatgatctttcaaggtctcactcctcgactatagcagcccggaatggatttgcaaga
ctgatggaacttgaagacacaagtcctttgatgacagaaaatgaaggcctggacagtggc
cttggggaggccccaccaacgtctgacaaaagaatgtgcagccctatagataatatggaa
ccattagaaacagaaatgtctgaagttgtgaaaatagcaacatcaatacacaaaactaga
ggcaataagcaattccacaaattggagaaagcctccccttgtgcatcattaattccagac
gagaccgaacaccaacctttaagaaaatcatcaaggaagaagcagaaaacggatttggag
tctgacaagattcttaaggagaaacagaagaaaagtctagagaaagttgctgagtggctc
atgaacgttccaactgaaggaagtcttgagttagagaaacccaacgaagacaccgatgac
tcggacagctgttcttccacttcaacaatagatgtcaagcaacacaacagtgatgtgaat
cctgggagagtggatcgtgctaaagcccttgaagagcaggtgtttggggccgtctacaaa
cgagagcgaagagggaccagggttgtctctcctccacttaatgtttttgtcaagccatca
acaactaaagacacacaaactgtctccaaaagaaggagaaacgctatcactcctgctgat
tttttcaagaaaacaggctctgaaggtaaaagtgcaagtgacatggaggaagagcaacaa
agattagaagaagtaaatgacaccagcagtgacatttttaaagaagcagaacacatcgag
gccatgaagaaaaattatatagacaaatatgaggaagagtcaaacaactttccagaaagt
gacaaaaataatggcaaagatgaggtttcctgtcccgtgtttgatattggacaacagcta
ccagacagaaagtcaaagacaagtacgcgcaacagtcttcagcaagtcgacagtgatttg
caagagcaagctaaggcaaactcagaaagtactgagcaaaagaaaactgacaagaggaaa
ggtaaaaacacgaggttagaaaaagccaagcctgctagagttccgaaaccccttgttctg
gttggtgttaaaaatggagaagccagtcctaagactagaccaaggtcaggagaagttcaa
gttcatattgagaattaccctagcagcgaagaccaagaaacccctgtcgtaaggagcacg
aggagaagtagaagactccagctcttcactgaagaaatccaagaacgtcacaagaaagca
aacttgaaagccaataaagctgaaaaaaatggcaatgttggaaagcaatctgaggaagct
gaagatggaacactggataatacggcatcaccatccaccaatgtaaacatgacaaaggtg
gctgaaagaaacggatgtatttatgatcaagatatagaagaaatagaaaacatggagtct
gatgagagaacatcttatatgagaccaaccgaagatgttaaaaagtcccttgctgaagtg
caaaacgctgaaaccttgtctgaagctagtgctgcatgttctgtcactgttgtcccaagc
tctacaagttcaactgaagcagctgtggtcgagcaaacacttgaaagggacaatccaaca
aatcatctcccaaacaatattcagttggaaaccttccctagcctgagaaaatgtgctgga
acagaaaatgaggaggataataatgacagtgaactggacacagagcaactgctcaagagc
ttcaaagccattaaaaggaaatccttccaccttggcggttcaaatttgaaaaggagccgt
ggtttagaccaagaaaacttgcagggtgccgaagcacaggaaaaccagcgtctttgttct
agtgttgaatctgcgaaaaattggatgtacacaaaggcatctgaagtcaccaaccaagag
gcattaggagacaataaaaactcatcttgcagtgatttgatatccccttccttttcacac
gccccgacaagaaaaccagttgttgagaaaccagatcacatggtggtagaagcctcgatc
cctggtagcagtcaggacagcgctggtggtaactgtgtctccaatagtgtcagcagcacc
ctcactccaaataaagtttcaaaacgtgaaatagaaagtcctcatctttctgttgtgtct
cgagtagtcgattctgggctctgcttcacagtcgctgaacgcgaggagccaaacgaaccc
tcaaattattctcaaatcacagagaaacagcttgatgctaccgagaggggtgccggcaga
ggaagggcgataagagacagcatttcggagtgccattcagctgctattggaatacattca
gtcaacaccgctgaacatgttttaaacgcagagtgctctttaactcctgatggccttgga
atacctgttgtacaaattgtccacgaagcacagtcggacagccacggtagtggagagctc
agtgccaattcctccatcaatagcatgcccaggaagaggacaagggcccagaggctcgac
tcttcattggaatcagacgacagtgaagagggattaccaactttgacagaaatttttgga
acatcagctcttccctctgcggtgacaaaggagctggacggctccagtgaagctaataga
tgtgaggatgctacagtttggggagcaaagcagttgagccgtccacctgcatgccccagc
cctgactgtgttaactccagccaagcatctgtggacttgtttggaacgccagatgaatgt
gatgtcccagtaaacgacgtcagcgttccctcacaaatcgaatcatcacaattttcaagc
gaagtccttgttacacagcaaaaaattgaaatgcagaaggagctggtgagattggagaag
ttgatggctctggtgacggaggttcttcaggaaaaagaaggcagtcctgcagaagaagtc
tcctcaaaaacaattcagagcagcaaaaccacaggcccagaccctcacatacccctcccc
tgtgaccaggacagaggccaaggttcagactggaaagctgttccagaagaagagcgagag
cccagcacaagaccatctgatggcaaagaggtcatccagcccagtgggtcaaagcatggc
agcactgcagagatggcagtgcagcgctccacgcacacagggccaagtgttaaaggcacc
ggaggctccaaaactcctagttcaagttcagcagccaaaacattaaagagcgatggttca
ccaccagatgggcaagaagacaaagaaaataacactccaccgagagacagaagtaaagct
aagatggtgctagtgtcatctggattaggccccaatgaacagataatggtcaaaaggttt
gccaagcgggttggtgcccgtgtggtttcccaggtaacagcggaggtgacccatgtcata
atgcacacagatgaacaactggtatgtgagcgcacactgaagtacttccttggcattgca
ggcaggaagtgggtggtgagcttccagtggatttccgagtgcttcaaactaaagaaactc
ttagatgagagtgtctttgaagtgagaggtgacgtggtgaatggccccagccaccagggc
cccatgagagctcgtaccactgaagacaataacttgctcctgaagggctacacaatctgt
ttccaagggccttttacagacatgactacagatgaaatggagtggatggtggagctttgt
ggagcagctttagtcaaagatcctcttctcctcgacagcaaacagaagtcccatcagctg
gtcattgtacagcctggatcagagtcgtcatcgtcgtccacatacagcagtctttctaga
caagctacagtcgtgacacgtggttggctgttggatactgtggcaacctacaccctccaa
aactacaacaagtacactacatag
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integrated database retrieval system
