Perca flavescens (yellow perch): 114548873
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Entry
114548873 CDS
T07494
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pflv03036
]
114548873 (smchd1)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114548873 (smchd1)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114548873 (smchd1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
114548873 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_5th
Ig_SMCHD1_2nd
HATPase_c_3
SMC_hinge
HATPase_c
Psb28
Motif
Other DBs
NCBI-GeneID:
114548873
NCBI-ProteinID:
XP_028424672
LinkDB
All DBs
Position
22:18147491..18178213
Genome browser
AA seq
1978 aa
AA seq
DB search
MEAGRVNRRIRVYDRRSENEQQVTGKLLETSGLDFNGFLKILHRKFAIRSHETFVLVTTD
RTVLDFDNFEKLQDDSTLHLLQREDQALALATEESITFKPHYNTLIRSGMYEYYASAGQK
PLPYTLAELIDNSISATAKNTGVRMIEIRLMFDESLGKPAVIVLDNGCGMTSKQLNNWAV
YKLSKFFRDNGTFGSKQEGYVRPDPVPRSLNSDISYFGAGGKQAAFYIGDSARMITKTVG
SPDVHELVISKEDFERKEKNKEDVYSGTIKNRKVGDSSHVTKDDERFLRSLIAEESAKES
FTAVIIMGVLPDHIRFLKDNFAVWTRQLAHTFHYYIHGVNGKNMSSSSTNSDHLPNIDIQ
ITLREKPPRCPRVMNLREVENDMQTLYINTAADTFEFKAYSEQNTGTVEGIIRYHPFLYD
KETYPEDPDADQVSLDDDNDDNESRVLHQARGKRPIFNCFWNGRLIPYTTVSEFDWCSQS
KGAKELAECYNRVSGVLFTDDRFTVSTNKLTFIELELILKNKDTIFTRIVNGQCPQEKKR
SAPPSLIKAQRSNIQKEFTQWLKNCHEKLDKQVKFMGHMETITRTDVPVKRDQYPWATFS
SIEWDGNIYKTGQLVKSQKTQPILYGRVVRFLLYGKHDGNVFATGGLVEVALEPKACYDK
IKTIAISKIDKSATDEAIQKNIDKDSAKLPEILKVDWPEGDPWPQNAARMAGSPFGPLQI
KILNKKGESISTMPQVSHGAVKKLIIELKVVQHGPKADQEVVSFVAQHSTTWGFWFKKIE
KLTDLGKYTLYLNTMLFENNATVFGGKKLPSYKLKFTIIEGRAETFVIGAVSPSLYVGVP
FNIPLLLKDGYDHSVTSPPDVKPVLKCRGLDLSYDRVDSSGITFTIFDVKARGKVLNYQQ
SKTYELRVTMPGLKKDTQTITISLLPGNPHALHVTPADNPITVQNGNPVTFKVEIHDEAG
NITAHSKQIVRCQVQGLPLVATDCSTTGAGQLVTKPINLKMIKGEPQNLKVHFEMPSQKK
MAKVVRELKVVPSTRVSRMELCSEDDENLMLRNNEKIEWLAGGLLENLFYKLYDEAGREV
PPTATIASKIKVNWTGDVNLEDLLKGKLPDLQVPTQVQEARFYQVSYQDQSVSVSFNIVP
RPDEPKRLKATVLQSTLKLGEILPGHINLELVDQYDNATKTLTSTCKNHMAVEAEGLDKS
AVVFRWQGSSSSVLVTGVRFQSGTPGHREMCFTYKSYVERIIVKVVAGVPAQLKLVSGPE
KPLQVLNDQGIATPFLVQLCDEWENPTTDQRVVVELKSSPPTLKVTTAVTSQPVNAEGKA
SFTVNCLSGPKGYYQLVFKGSLNQKPIPGPSVNLTVIPDPTKPVSLSVEYETNDKLPAGG
ILPVFSVTVVSDEGGPITTFKPAAVSMFLWKGGPSGKTPPQTAIELKCSKPMQNEKNDRF
HFRDKEIPEQVGKYTIQFFLRINKTNVLYSNQIAIHVVANQPVKLAPVSQPPTPVVSYSD
VIANRTLVKNMTLRITDSYGNPAGQDLDGEVVISIKNSSGEGNKSLPLFEGKANSLKINL
VEGKAHMARLAIMENSPGENGTTYVLLFIPQVSMVPTSLAPFELPFRFFNDSENQRKMSE
LSRKKDELTTALAKYSDIFSTYSELLSLLTSHHLVASNKEADLRNELNRRNVEIAQSIPD
VDRILNQKKMEASHVLRAPRRVCSLRDNFGGQQDVLGMVGHLAFVQDDDAARVISWHIRG
DMDCVITNTTAAAMKIFDDTHGSQQVMALDSVYVTPGNRPMPHIRNGRMLFNPSGNPVLA
RDLLIFPRDQESCNIAFKSILADTILIDDLNSGTNYRKAVVQNRMQCPTILTRQGDRISA
RGKFGGAQNKAPMNITPLFGAPLPQHYYTLKEHIDLISQHRLTLEKRDQTAKARDEHLKS
MKSPEMLQKHQEMELKKKQLEEIERQLVSTPVRPVKRSLENSGEPSSFIAKRTKQRSI
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaggaagagtcaacagaaggatccgtgtttacgaccgccgctctgagaacgag
cagcaagttacggggaaattgctggaaacaagcggtttggacttcaatggctttcttaaa
attctgcaccggaaatttgcaatccgttcacatgaaacatttgtgttggtcacaacggac
cgaacagtcctggattttgacaactttgagaagcttcaggatgacagcaccctccacttg
ttgcaacgggaggaccaagctctggcattggcaacagaggagtccatcacgtttaagcct
cattataatacgttgatccggagtggcatgtatgagtactatgctagtgcaggccagaaa
ccattgccatacacacttgctgagctgatcgacaactctatttcagccacagctaaaaac
acaggagtgaggatgatagaaataaggctgatgtttgatgaaagtcttgggaaacctgca
gtgattgtcttagataatgggtgcgggatgacctctaaacagctcaataactgggcagtg
tacaaactctctaaatttttcagggacaacggcacatttggaagtaagcaagaggggtat
gtccggcctgatcctgtccctcgtagtctcaacagtgatatatcctactttggagctgga
ggaaaacaggctgctttctacatcggagactcagccaggatgatcactaaaacagttggc
tccccagatgttcatgagctagttatatccaaagaggactttgagagaaaagaaaagaac
aaagaagatgtttacagtgggaccattaaaaacagaaaggttggtgactcttcacatgtg
actaaagatgatgagcgcttcctccgttcccttatcgctgaggaatctgcaaaggaaagc
ttcacagccgtgatcattatgggagtcttgcccgaccatataagatttctgaaagacaat
tttgcagtgtggaccagacagctagctcacacatttcactattacattcatggagtcaat
ggaaagaacatgagtagcagctctacaaattcagatcatctccctaacattgacattcag
atcactctgcgggagaagcctcccagatgtccccgtgtgatgaatcttagggaagttgag
aacgacatgcagactctgtacataaatactgctgctgacacatttgagtttaaggcctac
tctgaacaaaacactggcacggtggagggaattattcggtatcatcccttcctttatgac
aaggagacttaccctgaagaccctgatgctgaccaagtctctcttgatgatgacaacgac
gataatgagtctagagtcctgcatcaggcaagagggaaaaggccgatatttaactgtttc
tggaatggacggctcataccttacaccacagtgtctgagtttgactggtgtagtcagagt
aaaggagcaaaggagcttgcagagtgttacaatcgggtgtcaggggtgcttttcactgat
gacagatttacggtcagcacgaacaaactcaccttcatagagctggagctgatactgaag
aacaaggacacaatcttcacacgaattgttaatggacagtgtccacaggaaaagaaaaga
tctgcacctccctccctgatcaaggcacaaagaagtaacattcagaaggagtttacgcag
tggctaaaaaactgtcacgagaagttggacaagcaagtaaagttcatgggccatatggaa
accataacaagaacagatgtgcctgtaaagagagatcagtatccctgggcgacattctcc
tccatcgaatgggacggcaacatttacaaaacgggccaacttgtgaagtctcaaaaaaca
cagcccattctgtatggtagagtggttcgttttttgctgtatggaaaacatgacggaaat
gtctttgccacagggggactggtcgaagtggctctggaacccaaagcatgttacgacaaa
atcaagaccatagccatttccaagattgacaagagcgccactgatgaagccatccagaaa
aacatcgacaaagactccgccaagcttccagagattctgaaagtggactggccggaaggt
gacccctggccacagaatgctgcacgtatggctgggtctccgttcgggccactccaaatc
aaaatactaaacaagaagggagagtctatatccacgatgccacaagtgagccatggagca
gtgaaaaaactgattatagaactcaaagtcgttcagcacggtcctaaagccgatcaagag
gttgtctcttttgttgcccagcattcaacgacgtggggtttctggttcaaaaaaattgag
aaactgactgacctagggaagtatactctgtacctgaacactatgttatttgaaaataat
gctaccgtctttggagggaaaaagcttccaagctacaaactcaaattcaccatcatcgag
ggtagagctgagactttcgttatcggtgcagtgagcccctctctttatgtgggagtgcca
ttcaacattcctctgctgctgaaagatggttatgaccactcagtgacgtctcctcctgat
gttaaacctgtactcaaatgcaggggcctggacctgagttacgacagagtggacagcagt
gggatcacgttcaccatcttcgatgtcaaagcaagaggaaaagtcctcaattaccaacaa
tcaaagacatatgagttgagagtgaccatgcctggcctgaagaaagacacacagactatc
acgatcagtcttcttcctggtaatccacatgctctccatgtgacaccagctgacaaccca
atcacagtccagaatggaaaccctgtcacatttaaagttgaaattcacgatgaggccgga
aacatcaccgctcactccaaacagattgttcgctgtcaggtccaggggttaccactggtg
gcaactgactgcagcaccactggagctggacagcttgtgacaaagcccataaacctgaaa
atgatcaagggagaaccccaaaacctcaaagttcattttgagatgcctagtcagaagaag
atggctaaggttgtcagggagctgaaggtggtgcccagcacaagagtctcccgcatggag
ctctgcagtgaggatgatgagaatttgatgctaaggaacaacgaaaagatagagtggctg
gctggaggcttgctggagaacctgttctataagttgtatgatgaggctggcagagaggta
cctcccactgctacaatagcctccaagatcaaggttaactggacaggagatgtaaatctg
gaggatttgctcaagggcaagctgcctgacttacaggtgcccacgcaggtgcaggaagcg
cgcttctaccaggtgtcctaccaagaccagagtgtgtctgtctccttcaacatagtgcct
cgtccagatgaaccaaaacgactgaaagcaactgtactccaaagcacactgaagctgggt
gaaatcctacctggacacatcaacttggagcttgtggaccagtatgataatgcaaccaag
acgcttacctccacctgtaagaaccatatggctgtggaagctgagggtctggacaaatcg
gctgtcgtctttagatggcaggggagcagcagttctgttctggttacgggggtgcggttc
cagtccgggactcctggccacagagagatgtgcttcacctacaagagttatgtggagcgc
atcatagttaaagttgtcgctggggtccctgcgcagcttaaactagtcagtgggccagag
aagcctttgcaggtgttgaatgaccaaggcattgccacaccgttcctcgtccaactgtgt
gatgagtgggaaaatcccactacagaccagagggtggtggtagaattgaaatcttcaccc
ccgacattaaaggtgacaacagctgttacatcacaacccgtgaacgcagaagggaaagcc
tctttcactgttaactgtttgagcggaccaaaggggtactatcagctggtgtttaaaggt
tccctcaaccaaaaacccatccctggtccatcagtgaatctcactgtcatccctgatccc
accaaacctgtcagcctatcagtggagtatgaaaccaatgacaagcttcctgccggaggc
atcctcccagtcttctcggtgaccgtggtgtctgatgaaggaggcccgattacgactttt
aagcccgctgctgtgtccatgtttctgtggaagggagggccatcaggaaaaacccctcca
caaacggccattgagctgaagtgtagtaaaccaatgcagaatgaaaagaatgaccgtttc
cacttcagagataaagagatcccagaacaagttggaaagtacaccatccagttttttcta
cgaataaacaaaacaaacgtcctgtacagtaatcagattgctatacatgtggtggccaat
caacctgtcaaactggcacccgtctctcagccaccaaccccagttgtttcctacagtgat
gtcattgccaaccgaaccttggtgaagaatatgaccctgaggataacggattcatacgga
aatccagcaggacaggacctggacggggaggttgtcatttctataaagaactctagtgga
gaaggcaacaaaagcctccctctgtttgaaggcaaagccaacagcttgaaaataaacttg
gtagaaggaaaggcccacatggctaggcttgctatcatggagaacagccccggtgagaat
ggcactacatacgtcctcctcttcatccctcaagtgtcaatggttcccacgtctctggct
ccctttgagctccccttccgttttttcaatgattcagagaaccaacggaaaatgtctgag
ctgtccaggaagaaagatgagctcactactgctcttgccaaatattcagacattttttct
acatatagtgaacttcttagtttgctaacctctcatcacctggttgcaagtaacaaagag
gctgaccttagaaatgagctgaacaggaggaacgtggaaatagcacaaagtatcccagat
gttgacagaatcctaaaccagaagaagatggaagccagccatgtgctacgtgcacccaga
agagtttgttccctccgtgataacttcggcgggcagcaggatgttttgggaatggttggc
cacctggcatttgtgcaggacgatgatgctgcgagggttatctcatggcatatcaggggt
gacatggattgtgtcatcaccaacacgaccgcggcagcaatgaagatctttgacgacaca
cacggcagccagcaggtcatggcccttgacagtgtttatgtaacaccaggcaacaggccg
atgccacacataagaaatggccgcatgctcttcaatccctctgggaacccagtcctcgcc
agagatctcctgatcttcccccgtgaccaggagagctgtaacattgcttttaaaagcatc
ctagcagacactattctgattgatgacctgaactctggaaccaactacaggaaggcggtg
gtacagaataggatgcagtgtcccaccatcctgaccaggcagggggacaggatcagtgcc
aggggcaagtttggaggcgcacagaacaaagccccaatgaatatcacaccattgtttgga
gccccactcccacaacattactacactcttaaggaacacatagacctgatcagccagcac
aggttaactctggagaagagggatcagacagcgaaggcgcgtgacgagcatttaaaaagc
atgaagtcgcctgaaatgctacaaaagcatcaagaaatggagttgaaaaagaaacagctg
gaggagattgagagacaacttgtgtcaaccccagtacgaccagtgaaacggagtcttgag
aatagtggcgagccatccagcttcattgcaaagagaacaaagcagagatccatatga
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integrated database retrieval system
