Perca flavescens (yellow perch): 114570709
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Entry
114570709 CDS
T07494
Symbol
kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
114570709 (kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pflv03000
]
114570709 (kdm2b)
04121 Ubiquitin system [BR:
pflv04121
]
114570709 (kdm2b)
03036 Chromosome and associated proteins [BR:
pflv03036
]
114570709 (kdm2b)
Enzymes [BR:
pflv01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
114570709 (kdm2b)
Transcription factors [BR:
pflv03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
114570709 (kdm2b)
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
114570709 (kdm2b)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
114570709 (kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
114570709 (kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
114570709
NCBI-ProteinID:
XP_028456979
LinkDB
All DBs
Position
16:complement(17323431..17348020)
Genome browser
AA seq
1395 aa
AA seq
DB search
MAQAVETCADSGRRLRSICRRMYDENEDLSDVEEIVNIRGFSVEEKLVSDSYSSTFVHCM
EGKDFSYEYVQREALRTPLIFKEKDGLGIRMPDPEFTISEIKGLVGSRRSVDVMDVSTQK
GSEMSMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDQVDWVDNMWPPDL
KHSQTEATNVISDMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGQKVFWLVPPT
PHNLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGG
NILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEICWYVLERYLHCLTKRSYLSQEIHKE
PVQMDYDTKANTESLSSDSRSQDMNEDSCETQVRDGSGEKPERAAQDGPGSPDNRRGQHL
KAVLCVDSEDSCNPGSTSLEFPQTPSDSPASESPTRWTHLTEFELSGLRTLVEKLESLPE
NKKCVPVGIENPQALLEDIKVVFKEHADDDPKLAITGVPVVYWPKKTIKPRPPNRPKPKM
AASPASAVKLSASRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCI
MRQCIAPVLPHTAVCLVCGEAGKEDTVEDEEEKFNLMLMECSICNEIVHPNCLKVKDSNG
VVNDELPNCWECPKCNHAGKTGKASKQKRGPGFKYASNLPGSLLKEPRFNRDSKEELDPP
MVATATVTALTTTSAVKRKAEREEIPKRKEEEPPKKRPPLLSLDGTPRPRLEDNPLRKKR
KLFDTNDEPVIVKKKKKLSKPDNPLTPKLLRQIKTENAHGDEEDSQEDHEEDGLSLERIH
LKGKLEYDDEDQEEDEEGEEEGTLKKERDGSAEDKAKVLISPLQRTSAARESEQSSNSPR
AGPSSESGEAQERSSAPLKARHQRRRLPNKELSKEFNQEIPKTEDCLSNQNHSSVKTEED
AANHNRRPLKNEDSVTNQNRKPLKTEDSTTNQSRRALKIEEGLANQNRRPLKAEDSLANQ
NHRPVKPEPENKVDDQKPKWPLNNGSSDLGDWLRHRGREVSETPRGYSPLSWNRSAQITS
VCPRPLPCRSPPKCIQMERHVIRPPPISPPPDRLPLNDGEAHVMRREMWMTVFSHLAHRD
LCVCMRVCRTWNRWCCDKRLWKQINLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQL
SWLINRLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDN
RPGQLDNRSKLRNVEDLRLAGLDITDTSLRLIIRYMPSLSKLDLSYCNHVTDQSVNILTA
AGTTTRDSLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCDQFIAEMSVS
VQFGLIEEKLLQKIS
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggccgtggaaacgtgtgctgattctggacgcaggctgcgctccatctgccgg
aggatgtacgacgaaaacgaggatttgtccgatgttgaagaaattgtaaacatcagaggt
ttcagtgtggaggaaaagcttgttagtgacagttacagctccacatttgttcactgcatg
gagggtaaagacttctcttatgaatatgtgcaaagggaggctctcaggacaccactcatt
tttaaagagaaagatggactagggatcagaatgcctgatccagaatttacaatcagtgaa
attaaaggcttagttggcagtcgtcggtctgtggatgttatggatgtgagcactcagaaa
ggctcagaaatgagcatggctcagtttgtccgttattatgagacaccagaggaagagcgg
gacaaactctttaatgttatcagcttagagttcagtcacactaagctggagaacctcatc
aagcggcccactgtggtggatcaagtggactgggtggacaacatgtggcctcctgatctg
aaacatagccaaacagaagccaccaatgtaatctcagacatgaagtaccctaaagtgcaa
aggtattgtttgatgagtgtgaagggctgctacacagatttccacatagatttcggggga
acttctgtttggtatcacgtattcaagggacagaaagtgttttggcttgtgcctccaacc
ccacataaccttgccctttatgaggactgggtcctgtcaggcaagcagagtgatatcttc
ctgggtgaccgagctgatggatgccagagagtggagcttaagcaaggatacaccttcttc
atcccatctgggtggattcatgctgtctacactccagaggacacactggtgtttggaggc
aatattttgcacagcttcaacattcctatgcagcttaccatccatgagatagagaacagg
actaaggttcattccaagttccgtttccctttctactatgagatatgctggtatgttctg
gagagatacctgcactgcctcaccaaacgctcttacctttctcaggagatccacaaagag
cctgtacaaatggactatgacacaaaggcaaacacagagagcctttcctctgactcaagg
agccaggacatgaatgaggactcatgtgagactcaagtcagagatggctcgggtgaaaaa
ccagagagagctgcccaggatggccccggctctcctgacaaccggaggggccagcatctc
aaagctgttttatgtgttgactctgaggatagttgtaatcccggctccacctctctagag
ttcccccaaaccccctctgactccccagcctcggagtctccaactagatggacgcatttg
accgaatttgaactgagcggacttaggacactggttgagaagctggagtcgctccctgaa
aataagaaatgtgttccagtgggaatagagaacccacaagccctgctggaggacataaag
gttgtcttcaaagaacacgccgatgacgaccccaaattagcaatcactggagttcctgtg
gtgtactggcccaagaaaactataaagccccggcctcccaaccggccgaaacctaagatg
gcagcttctcctgcatcagcagtcaagctgtcagctagtcggggaacatctggtgccagg
aggagaaggacgcgctgtcggaagtgtgaggcatgcctgcggacggagtgtggagagtgc
cacttctgtaaagacatgaagaagtttggtgggccaggccggatgaaacagtcctgcatc
atgaggcagtgcattgcacctgtcctgccccacacagcagtgtgtctcgtctgtggagag
gcagggaaagaggacacagtggaggatgaagaggagaagtttaaccttatgctcatggag
tgctccatctgcaatgagattgttcatcctaactgtcttaaggtaaaagattcaaatgga
gtagtcaatgatgaattgccaaactgctgggagtgcccaaagtgcaaccatgcagggaaa
acagggaaagcctcaaagcaaaaaagggggccaggattcaagtatgcatcaaacctccct
ggctctctactgaaagaaccacgatttaaccgggattcaaaagaggagcttgacccaccg
atggtggctacagcaactgttactgctttgactaccacatctgctgtgaagagaaaggca
gaacgggaagaaatccctaagaggaaagaagaagagcctccaaagaaacgtccccccttg
ctgtctttggatggtacgccccgaccgaggctcgaggacaacccactaaggaaaaagaga
aaactttttgacaccaatgatgaacctgtcattgtgaaaaagaagaagaagctttccaaa
ccggataatcctttgactccgaagctgttgcggcaaatcaagacagagaatgctcacggt
gatgaagaagatagtcaagaggatcatgaagaagatggattgtccttggagaggattcat
ttaaaggggaaacttgagtatgatgacgaggaccaagaggaagatgaggagggagaggaa
gaggggacattgaaaaaagagagagatggcagcgcagaggacaaagccaaggtcctaata
agtccactgcaaagaacatccgcagccagagagagtgaacaatcgtccaactctcccaga
gctggaccaagcagtgaatcaggagaagctcaggagaggagctcagctccgctaaaggct
cgccatcagcgtcgacgcctccccaacaaagagctgagcaaagagtttaaccaggagatt
cccaagacagaagactgtctgtccaaccaaaatcacagctcagtgaagacggaggaagat
gcagccaatcacaatcgtcgaccactgaagaatgaggactccgtgaccaatcagaatcgt
aaaccactaaaaaccgaggactcaaccactaaccagagccgcagggcccttaaaatagag
gaaggtttggccaatcaaaacagacggccactgaaagctgaggacagcctggcaaatcaa
aaccacaggcctgtaaaacctgagcctgagaacaaagtagacgaccaaaagcccaaatgg
cctcttaataacggcagcagcgacctgggcgactggctacgacatagggggcgggaggta
agcgagacgccacggggttactcgccactcagctggaacagaagcgcacagatcacatca
gtatgcccccgcccactcccctgccggtcaccgccaaaatgtatccaaatggagcgccat
gtgatccggccccctcccatcagccccccgcctgacagactcccgctgaacgacggtgaa
gcacacgtgatgcgaagagagatgtggatgacagtattcagtcacttggctcacagagat
ctttgtgtctgtatgcgtgtctgcaggacctggaacagatggtgctgcgacaagaggctt
tggaagcagatcaatctgaaccgctgtaagtccatcacacctctcatgctaagtggtatc
atccggagacagccggttgctctggacctcagctggaccaacatatccaagaaacaactc
agctggctcatcaacagactgccaggtctgcgtgtcctgctgttgtcaggatgctcctgg
gtggcagtctctgctctttgcacctccagctgtcctcttctgcgaactctggatgttcag
tgggttgagggactgaaagatgcccagatgagggacctcctgtcgcctcctacagataac
aggccaggtcagttggacaacagaagtaaactgcggaatgtggaggacctgcgcctggca
ggcttggacatcacggacacgtctctgcgcctcatcatacgttacatgccctcgctgtcc
aagctggacctcagctactgcaaccacgtcacagaccagtctgtcaacatcctgactgct
gcagggacgaccaccagagactcgctcactgacatcaacctgtcagtctgtaacagggtc
acagaccagtcgctgacctatttcaagcgctgtggaagcatatgtcatatcgacctgcga
tactgcaaacaggtgaccaaggaaggatgtgaccagttcattgcagaaatgtccgtcagc
gtgcagtttggactgatagaagagaaactgctgcaaaagatcagttag
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integrated database retrieval system
