Pseudomonas fluorescens UK4: HZ99_08415 Help Entry HZ99_08415        CDS       T03319                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pfn  Pseudomonas fluorescens UK4 Pathway pfn03030   DNA replication pfn03410   Base excision repair pfn03420   Nucleotide excision repair pfn03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pfn00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     HZ99_08415    03410 Base excision repair     HZ99_08415    03420 Nucleotide excision repair     HZ99_08415    03430 Mismatch repair     HZ99_08415  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pfn03032]     HZ99_08415    03400 DNA repair and recombination proteins [BR:pfn03400]     HZ99_08415 Enzymes [BR:pfn01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      HZ99_08415 DNA replication proteins [BR:pfn03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      HZ99_08415 DNA repair and recombination proteins [BR:pfn03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      HZ99_08415    NER (nucleotide excision repair)     GGR (global genome repair) factors      HZ99_08415    MMR (mismatch excision repair)     DNA ligase      HZ99_08415   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       HZ99_08415 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase HHH_2 HHH_5 BRCT DNA_ligase_ZBD 5_3_exonuc Nlig-Ia PTCB-BRCT DUF4796_N RUBY_RBDX Motif Other DBs NCBI-ProteinID:  AIG02175 UniProt:  A0A379IGV2 LinkDB All DBs Position complement(1899487..1901841) Genome browser AA seq 784 aa AA seqDB search MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ RVGSAALSAFTQVRHEIPMLSLGNAFDEASMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC EPKLDGLAVSLLYQNGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG EVFMSKTGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS DTHIGNLQQLQKWGMPISHELKLAKGIEDCLEYYRDIGERRNSLPYEIDGVVFKVNSIAY QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVAERRPENARAVQIPENCPVCGSHVE RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD EKLIGSPADLYKLKYEQIIDLEGFADVSSKKLIAAIENSKTPTLARFIYALGIPDVGEET AKVLARSLASLERVQQALPEVLTYLPDVGLEVAHEIHSFFEDSHNQQVIGALLSPDECGL QLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGTLEGVIKADWLDMRQAL PEKQAKAVRDFFDNPDNASRAFDIEQQLKDFGMHWQSEKKVVEGLPEAGHTWVLTGSLEL MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAG HNIT NT seq 2355 nt NT seq  +upstreamnt  +downstreamnt atgaccgccgcccacacccgcatcctcgaattgcgcgctgaactggatcagcacaactac cgctatcacgtgctcgacgagccgagcattccggacgccgagtacgaccggctgttccat gagctcaaggccctggaagccgagcacccggacctggtgacccgcgattcgccgacgcag cgggtgggcagtgcggccttgtcggcctttacccaggtgcggcacgagatcccgatgctc agtctgggcaacgcttttgatgaggccagcatgctggagttcgatcgccgggtcaccgag ggcctcgacctgccggtgggcgatctgtttggcggtggcgcggcggtggaatacagctgt gagccgaagctcgatggcctggcagtcagcctgctttaccaaaacggtgagctggtgcgt ggcgcgacccgtggcgatggcaccactggcgaggatatcagcgtgaatgtgcgcaccgtg cgcaatatcccgttgaaactgcatggcagcggctggccggcgaccctggaagtgcgcggc gaagtattcatgtccaagaccggcttcgagcgcttgaatgccacgcaactggaagtcggc ggcaaaaccttcgccaacccgcgcaacgcggcggcgggtagcctgcgccaactcgactcg aagatcactgccagccgtccgctggaattctgctgctacggcgtgaccacggatatcagc gacacccatatcggcaacctgcagcagttgcagaagtggggcatgcccatcagccatgag ctgaagctggccaagggtattgaggattgcctggagtactaccgcgatatcggtgagcgg cgtaacagcctgccctatgaaatcgacggagtggtgttcaaggtcaacagcatcgcctat cagcgtgaactgggctttcgcgcccgcgagccacgctgggccatcgcccataagtttccg gcgatggaagagctgaccgaactgctggacgttgaattccaggttggccgcaccggcgcc gtgacgccagtggcgcgcttgaagccggtcaaggtcgctggcgtgaccgtgtccaatgcg acgttgcacaacatggacgaagtggcgcgcctgggcttgatgattggcgacaccgtgatc atccgccgggccggtgatgtgatcccacaggtcgtgtcggtggttgccgagcgtcgcccg gaaaatgcccgtgccgtacagatccccgagaactgcccggtgtgcggttcccatgtggag cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtat cgctgtgtcgggcgcctggcctgtggtgcgcagctcaagcaggcgattatccattttgtc tcgcgtcgggccatggatatcgacggcctgggcgacaagaccatcgagcaattggtcgat gaaaagctgatcggctcgcccgctgacctttacaagcttaagtacgaacagatcatcgac ctggaaggctttgccgacgtttccagcaaaaagctgatcgccgccatcgaaaacagcaag accccgaccctggcgcgcttcatttatgccctgggtattcccgatgtgggcgaggaaacc gccaaggtgctggcgcgctccctggcgtcccttgagcgcgtgcagcaagccttgccggaa gtactgacgtacttgccggatgttggcctggaagtggctcacgagattcacagcttcttt gaagacagtcacaaccagcaggtgatcggcgcgctgctgtcgccagatgaatgcggcctg cagttgcaggatcagggtgagctcagcgccgagttcgctgccagcacgaccttgggcggg ctcctcgacaagttgcacgtgccaagcgtcggcccgggcgccgcgcagaaacttgcagac aagtttggcaccctggaaggtgtgatcaaggccgactggctcgacatgcgccaggccttg cctgaaaagcaagccaaggctgtgcgcgacttcttcgacaatccggataacgccagccgt gcctttgacatcgagcagcagctcaaggatttcggcatgcactggcagagcgagaagaag gtggtcgagggtttgcctgaagcgggccatacctgggtgctcaccggctccctggagttg atgagccgcgacgtggccaaggaaaagcttgaaagcctgggcgccaaggtggcgggctcg gtgtcggcgaaaacccattgtgtggtggcggggccgggggctgggtcgaaattggccaag gccagcgagctggggttgaaggtgttggacgaggaggctttcgttgccttcctggccggc cacaacatcacctga

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