Pragia fontium: QQ39_00840
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Entry
QQ39_00840 CDS
T03952
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfq
Pragia fontium
Pathway
pfq03030
DNA replication
pfq03410
Base excision repair
pfq03420
Nucleotide excision repair
pfq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QQ39_00840
03410 Base excision repair
QQ39_00840
03420 Nucleotide excision repair
QQ39_00840
03430 Mismatch repair
QQ39_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfq03032
]
QQ39_00840
03400 DNA repair and recombination proteins [BR:
pfq03400
]
QQ39_00840
Enzymes [BR:
pfq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QQ39_00840
DNA replication proteins [BR:
pfq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QQ39_00840
DNA repair and recombination proteins [BR:
pfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QQ39_00840
NER (nucleotide excision repair)
GGR (global genome repair) factors
QQ39_00840
MMR (mismatch excision repair)
DNA ligase
QQ39_00840
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QQ39_00840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKJ40798
LinkDB
All DBs
Position
196616..198334
Genome browser
AA seq
572 aa
AA seq
DB search
MLLFIKLLIGWLLLYLSGGTAWAQGMADCPVWNKAQAVREIGALDAQLARWDEAYYFRGV
SQIDDGIYDSLLQQRQNWYACFAEFVVDMIPVKKDIPLLPLLHPVMHTGLIKLADIQSVM
RWMAQRQDLWIQPKIDGVAATLVYQQGHLVSAMSRGDGVKGEDWTAHALKIKGIPQRLPT
ERQRLVVQGELFWRLDGHVQRRDGGQNARSKVAGAMMSKTLSPQAIEHIEFWVWDWPDGP
EDMPSRLNELNQMGFRYGPDNTHSVDSFEKAQHWYQHWFDTALPFARDGVVIRQGNRPLG
INWIAKPPTWAAAWKYPAENVIAEVQSISFNVGRTGRISTIVNVKPIKLDDKWIRKISIG
SSARWKTLDIRPGDRVVLTLAGQGIPHITQVAWRLAERAVVNVPDETQYHPLSCWTLTRD
CEQQFISRLVWLSGKQGLHLKGLSYKTWQQLVALGWVKDMTSWLSLSEAELIAMTGVGKK
VGKQMPQQFMQYINAARQRDAAQWLRGLGLNFISTEKIRHLGWHQLTNMSIADWQKEPEL
GAKGAQQAYEFIRHPQVQAAVEHLKAAGIQGF
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgttgctatttatcaaactgttaattggttggttgttgctctatttaagcgggggaacg
gcctgggcacaaggaatggcggattgcccggtctggaataaagctcaggcagtacgtgag
atcggtgcattggatgctcagcttgcccgttgggatgaagcgtattatttccgcggtgtg
tcgcaaattgatgatggcatttacgatagcttgcttcaacagcggcagaactggtatgcc
tgctttgccgagtttgtggtcgatatgattccggttaaaaaagatattcccctgcttccg
ttgcttcatccggtgatgcataccggattgattaagctggcggacattcagtcggttatg
cgttggatggcgcaacggcaggacttatggatacagcccaaaattgatggtgttgcggct
acgctggtgtatcaacaggggcatctggtgtcggcaatgagtcgaggcgatggtgtaaaa
ggtgaagactggacagcccatgccttgaagattaaggggataccgcagaggctaccaacc
gaacgccagcgtttggtggtgcaaggggagctgttctggcgtttggatggacatgttcaa
cggcgggatggtggtcagaatgcccggtctaaggtggccggtgccatgatgagtaaaacg
ctgtcgccacaggctattgagcatattgagttttgggtctgggattggcctgatggcccg
gaagatatgccttcacgtttgaatgagctaaatcagatgggctttcggtatggaccagat
aatacgcattctgtggattcatttgagaaagcgcagcactggtatcagcattggtttgat
acggcgctgccctttgcccgagacggtgtggttatccgtcagggaaacagaccattaggc
attaactggatcgcgaaacccccaacatgggcggccgcatggaaatatccagcggaaaac
gttattgctgaggttcaatcgattagctttaatgtgggaagaaccggtcgtatttcgacg
atagtcaacgttaagccgattaagttggatgataagtggattcgtaagatatccattggc
tcatccgcgcgttggaaaacgttggacattcgccccggcgatcgcgtggtattgacgctg
gctgggcagggaatcccgcatattactcaggtagcttggcgtttggctgagcgagcagtg
gtgaatgtacccgatgaaacacaatatcacccactaagttgctggacgttaacccgcgac
tgcgaacagcagtttatctcccggctggtctggctcagcggtaagcagggattacatctg
aaagggcttagctataaaacatggcaacagttggtcgctttaggctgggtgaaggatatg
acttcttggctttccctgtcggaagcagagcttattgcaatgactggggtaggcaaaaag
gtaggtaaacaaatgcctcagcaatttatgcaatatatcaatgcagcccggcagcgtgac
gccgcacaatggttaagaggattagggctgaatttcatctcaacggaaaagattcgtcat
cttggttggcatcagttaaccaatatgagcatagcggactggcaaaaagagcctgaactt
ggtgcgaagggcgcccaacaggcatatgaatttatacggcatccacaggttcaggctgcg
gttgaacacttaaaagccgcaggcattcaaggattctaa
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