Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_19440
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Entry
PFREUD_19440 CDS
T01252
Symbol
nth
Name
(GenBank) Putative endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Pathway
pfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PFREUD_19440 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfr03400
]
PFREUD_19440 (nth)
Enzymes [BR:
pfr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PFREUD_19440 (nth)
DNA repair and recombination proteins [BR:
pfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PFREUD_19440 (nth)
Prokaryotic type
PFREUD_19440 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
RecR_HhH
HHH_5
HHH_8
IMS_HHH
EndIII_4Fe-2S
Motif
Other DBs
NCBI-ProteinID:
CBL57437
UniProt:
D7GFX6
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All DBs
Position
2095880..2096638
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AA seq
252 aa
AA seq
DB search
MASENTMNEQNASTGAGKAAAGSDRATATGEVAAAHEIFRILHQTYPDARCALTFHDPFE
LLVATVLSAQTTDKGVNKVTPILFDHYPDAAALGAASLPEVEQIIRPTGFFHNKATAIVG
IGQALTENFHGVVPREIDQLTSLPGVGRKTAQVVRGHAFGIPGVTTDTHVLRVSKRLGFT
SSTKPLTVERDVSALFDESTWTLLSDTLIFHGRARCHAKKAACGACPVAGLCPSFGIGPT
DPDEAERLVRSP
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgagaacacgatgaacgaacagaacgcatcgacgggcgccgggaaagctgcc
gccgggtctgaccgcgcaaccgccaccggtgaggtggccgctgcccatgagatcttccgg
atcctgcaccagacctatcccgacgcccgctgcgcgctgaccttccacgaccccttcgaa
ctgctggtggccacggtgctgtcggcccagaccaccgacaagggcgtcaacaaggtgacc
ccgatcctgttcgaccactatcccgacgctgccgcgctgggtgccgcctcgctgcccgag
gtggagcagatcatccggcccaccggcttcttccacaacaaggcgacggccatcgtgggc
atcggacaggcgctcaccgagaacttccacggggtggtcccccgcgagatcgaccagctc
acctccctgccgggcgtgggacgcaagacggcccaggtggtgcgcggccatgccttcggc
atccccggcgtcaccaccgacacccatgtgttgcgggtgagcaagcgcttgggcttcacc
agctcgaccaagccgctcaccgtggaacgcgatgtgagcgccctgttcgacgaatcgacg
tggacgctgttgtcggacaccctgatcttccacggccgggcgcgctgccacgccaagaag
gcggcctgcggggcctgcccggtggccgggctgtgccccagcttcggcatcggacccacc
gatcccgacgaggccgaaaggctcgtgcgctcgccgtga
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