Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0777
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Entry
RM25_0777 CDS
T03860
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Pathway
pfre03030
DNA replication
pfre03410
Base excision repair
pfre03420
Nucleotide excision repair
pfre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RM25_0777
03410 Base excision repair
RM25_0777
03420 Nucleotide excision repair
RM25_0777
03430 Mismatch repair
RM25_0777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfre03032
]
RM25_0777
03400 DNA repair and recombination proteins [BR:
pfre03400
]
RM25_0777
Enzymes [BR:
pfre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RM25_0777
DNA replication proteins [BR:
pfre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RM25_0777
DNA repair and recombination proteins [BR:
pfre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RM25_0777
NER (nucleotide excision repair)
GGR (global genome repair) factors
RM25_0777
MMR (mismatch excision repair)
DNA ligase
RM25_0777
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RM25_0777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AJQ90502
LinkDB
All DBs
Position
903371..905665
Genome browser
AA seq
764 aa
AA seq
DB search
MTAHEDPDEDIPTGLDAAVTVKVAGVDQQRRHAELVKEIDDAQEAYYGRDKPFITDALYD
ELMLELQKLEAEYPSLRTPDSPTQRVGAPQEETDFSPLTHPSQMLSLDDVFSIDELKEWM
TRTEAALGHTPEWLCEVKIDGLAIDLQYVNGRLQTAATRGDGRVGENITPNARTIKAIPQ
RLRPDPAQDFLALFEARGEVFVPLKEFAAYNDKLADQGKPQFANPRNAAAGSLRQKDPRV
TAQRPLSSICHGLGVADGLAVTRQSDAYAVMKAWGLPISPYNKVVHSLDEVLDFISYYGQ
HRHDLIHQIDGIVVKVDSFAEQQQLGVTSRAPRWAIAFKYPPEEVNTRLLDIRVKVGRTG
RVTPYGVMEPVQVAGSVVSSATLHNAYEVERKGVLIGDMVVLRKAGDVIPEIVGPVVEMR
TGAERPFVMPTHCPSCGTKLAPEKESDKDIRCPNSKSCPAQLRERLFSLAARSALDIEAL
GYQGADAILRAGVLDNEAQLFNLTPEQLVTVPFYTRGATPRELKEPALVPPPGIRDGRVL
SANGRRLLENLRTARHQPLWRVLVALSIRHVGPTAARALAARFGSMDAIRAAGVEELADT
DGVGLIIAEAVRDWFTVDWHLEILNAWAADGVSMADEKSARPAQTLRGLTVVVTGSLQDF
TRDSAKAAITDRGGKAAGSVSRHTDYVVVGENAGSKQARAEQLGVPMLDEAQFRELLEHG
PTPASETPASETPAPETPAPETSAPTTRASGAPGTPPETRDRRS
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgcacgaagatcccgacgaggacatccccaccggccttgatgccgcagtgacg
gtgaaggttgccggtgtcgaccagcagcgacggcacgctgagctggtcaaggagatcgac
gacgcgcaggaggcctactacggtcgtgacaagccgttcatcaccgacgcgctgtatgac
gaattgatgctcgagctgcagaagctcgaggccgaatatccctcgttgcgcacccctgac
agccccacccaacgcgtgggggcgccccaggaggagaccgatttctcgccgctcacccat
ccctcgcagatgctcagcctcgatgacgtcttcagcatcgacgagctcaaggagtggatg
acccggaccgaggccgcgctgggccacacccccgagtggctgtgcgaggtgaagatcgac
gggttggccatcgacctccagtacgtgaacggccggttgcagaccgcggcaacccgtggc
gacggacgggtgggggagaacatcacccccaatgcacgcaccatcaaggcgatcccgcag
cgcctgcgccccgatcccgcccaggatttcctggccctgttcgaggcccggggcgaggtc
ttcgtgccgctgaaggagttcgccgcctacaacgacaagctcgccgaccagggcaagccg
cagttcgcgaatccgcgcaatgccgcggccggctcgttgcggcagaaggacccccgggtc
accgcgcaacggcccctgtcgtcgatctgccatggcctgggcgttgccgacggcctggcc
gtgacgcgccaatccgatgcctacgccgtgatgaaggcctggggactaccgatcagtccc
tacaacaaggtggtgcactccctcgacgaggtgctcgacttcatctcgtattacggccag
catcgccacgacctgatccaccagatcgacggcatcgtggtgaaggtcgattcctttgcc
gagcagcagcagctgggggtcaccagcagggcgccgcgctgggccatcgccttcaagtac
ccgcccgaagaggtgaacacgcggctgctcgacattcgcgtgaaggtggggcgcaccgga
cgcgtcaccccctacggcgtgatggagcccgtgcaggttgccgggtcggtggtgtccagc
gcgacattgcacaatgcctacgaggtggagcgcaagggcgtcctgatcggggacatggtg
gtcctgcgcaaggcgggcgatgtgattcccgagatcgtgggaccggtggtggagatgcgc
accggtgccgaacgccccttcgtgatgcccacccactgcccgtcctgtggcacgaagctg
gccccggagaaggagagcgacaaggacatccggtgtcccaactcgaagagttgccccgcg
cagttgcgcgaacgcctgttctcgctcgcggcgcgttcggcgctcgatatcgaggccctg
ggctatcagggggccgacgcgatcctgagggccggcgtcctggacaatgaggcccagttg
ttcaacctgacgcccgagcagctggtgaccgtgcccttctacacccgcggcgccacgccc
cgtgagctgaaggaaccggccctggtgccgccgcccggcatcagggatggacgcgtgctg
tcggccaacggacgccggctcctcgaaaacttgcgcaccgcccgccaccaaccgctgtgg
cgggtcctggtggcgctgtcgatccgccatgtcgggccgacggcggcccgtgccctggcg
gccaggttcggttccatggacgcgatccgcgcggcgggcgtggaggaattggccgacacc
gacggggtgggcctgatcatcgccgaggccgtccgcgactggttcaccgtggactggcac
ctcgagatcctcaacgcctgggcagccgatggggtctcgatggccgatgagaagagcgcc
cggccggcccagacgctgcgcgggctcaccgtggtggtgaccgggtcgctgcaggacttc
acccgggactccgccaaggccgccatcaccgaccggggaggcaaggccgccggatcggtc
agccgccataccgactacgtcgtggtcggtgagaacgccgggtccaagcaggccagggcc
gagcagttgggagtgcccatgctcgacgaggcacagttccgggagctgcttgagcacggt
cccaccccggcgtcggaaaccccggcgtcggaaacccccgcgccggaaacccccgcgccg
gaaacctcagccccgacgaccagggccagtggcgcacccgggaccccgcccgaaacccgc
gaccggcgcagctag
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