Peribacillus frigoritolerans: L8956_02340
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Entry
L8956_02340 CDS
T08180
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfri
Peribacillus frigoritolerans
Pathway
pfri03030
DNA replication
pfri03410
Base excision repair
pfri03420
Nucleotide excision repair
pfri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L8956_02340 (ligA)
03410 Base excision repair
L8956_02340 (ligA)
03420 Nucleotide excision repair
L8956_02340 (ligA)
03430 Mismatch repair
L8956_02340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfri03032
]
L8956_02340 (ligA)
03400 DNA repair and recombination proteins [BR:
pfri03400
]
L8956_02340 (ligA)
Enzymes [BR:
pfri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L8956_02340 (ligA)
DNA replication proteins [BR:
pfri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L8956_02340 (ligA)
DNA repair and recombination proteins [BR:
pfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L8956_02340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L8956_02340 (ligA)
MMR (mismatch excision repair)
DNA ligase
L8956_02340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L8956_02340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ULM97607
LinkDB
All DBs
Position
489510..491516
Genome browser
AA seq
668 aa
AA seq
DB search
MDIQAAERKVLELQTLLNQYSYEYYVMDQPSVPDAEYDRLLRELIGYEEKFPELQTADSP
TQRVGGAILDMFEKVEHTTPMLSLGNAFNESDLRDFDRKVRQSVGDDFSYVCELKIDGLA
VTLQYENGYFVRGATRGDGTIGEDITANLKTIKSIPLKLREPVAIEVRGEAFMPKKSFES
LNKAKEERGEEPFANPRNAAAGSLRQLDPKLAAKRNLDIFLYAIADLGETGVRSHSEGLD
LLDRLGFKTNRERKTCSNIEEVLAYIVEWTEQRPNLAYDIDGIVVKVDSLEQQDELGFTA
KSPRWAIAYKFPAEEVITTLRDIELNVGRTGVLTPTAVLDPVRVAGTTVQRASLHNEDLI
REKDIRIGDQVVVKKAGDIIPEVVNVLAERRTGEEVEFQMPTECPECSSELVRLDGEVAL
RCINPKCPAQIREGLIHFVSRTAMNIDSLGEKVISLLFKEELIQDVADIYKLTYDQLIAL
ERMGDKSVTKLLQAIEASKTNSLEKLLFGLGIRHVGSKAAKTLAREFGTMEALSKASREE
LTAINEIGDKMADSIVAYFELEEVHALLNELDAAGVNLTFKGQRAVAIEDIDSIFAGKTV
VLTGKLHQLTRNEAKEKLEALGANVAGSVSKKTDLVVAGEDAGSKLAKAESLGVMVWDEE
RLIEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacatacaagctgcagagaggaaagttctggaactgcaaacgttattgaatcaatac
agctatgaatattatgtgatggaccagccatcagtacctgatgctgaatatgatcggctg
ctacgtgaacttattgggtatgaggagaaatttccggaactgcaaacggcggactcgccg
acacaacgggtcggtggcgccattttggatatgtttgaaaaggtggagcataccacaccg
atgcttagtttaggcaatgccttcaacgaaagtgacttgcgggatttcgacagaaaggtc
agacaatctgtaggtgacgatttttcctatgtatgtgaattgaaaattgacggacttgcc
gtcacacttcaatatgagaatggatatttcgtaagaggggcaacccgtggagacggaacg
atcggtgaagatattaccgccaatttgaaaacgatcaagtcgatcccattgaagctgcgg
gagccagttgccattgaagtgcgcggtgaggccttcatgccaaaaaaatcattcgaatca
ttaaacaaggctaaggaagaacgcggtgaggaaccatttgcaaacccaagaaatgcagct
gccggctcgttaaggcagcttgatccgaaacttgctgcgaaacggaacttggatattttc
ctttatgcgattgccgatttgggggaaacgggggtccgttcccatagcgagggtctggat
ttattggatagactcgggtttaagacgaaccgggaaagaaaaacatgctcgaatatagag
gaagtactggcctatatagtagaatggacggaacaacgtccaaacttagcctatgatatt
gatggaattgtcgtaaaggtggattcccttgaacagcaggatgaattaggttttactgca
aaaagtccgcgatgggccattgcttataaattcccagctgaagaagtcattacaacccta
agggatatcgagctgaatgtgggccgtacgggtgtattgaccccgactgccgttttggat
cccgtccgggtagcaggtacgactgtgcagcgagcttcacttcacaatgaagacttaatc
cgtgaaaaggacatcagaatcggagatcaagtggttgtgaaaaaagcgggtgatatcatt
ccagaggtagtcaatgtactggcagagcgccgtacaggggaagaagtcgagtttcagatg
ccgactgagtgccctgagtgcagcagtgaacttgtccggctggacggggaggttgcttta
cgctgcatcaacccgaagtgtcctgcacaaatacgggaaggtttgattcactttgtttcc
cgtacagctatgaatatagacagtcttggtgaaaaagtgattagcttgttatttaaagaa
gaactcatacaagatgtggctgatatttataagcttacatacgatcaactgattgctttg
gaaaggatgggggataaatccgtcactaaacttcttcaagcaatcgaagcttcgaagacc
aactcgttggaaaaattactattcgggctgggcattcgccatgttggttcaaaagctgcc
aagacgcttgcgagggaattcgggacgatggaagccttaagcaaggcgagccgtgaagaa
ctaacggccatcaatgaaataggcgataagatggctgattccatcgtagcttattttgaa
ttggaagaagtccatgctttattgaatgagttggatgcagccggtgtgaatcttactttc
aaagggcaaagagctgttgctatagaagatatcgactccatttttgccggtaaaacagtc
gttctaacgggtaaactgcatcagttaacacgtaacgaagctaaagagaaattagaggcg
ctaggagctaacgttgctggaagtgtaagcaagaaaaccgatttggtcgtagctggtgaa
gatgccggttccaaactggcaaaagctgaaagcctaggcgtcatggtatgggatgaagag
agactgattgaggaacttaataaataa
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