Pseudomonas fluorescens SBW25: PFLU_5711
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Entry
PFLU_5711 CDS
T00899
Name
(GenBank) DNA ligase B (EC (Polydeoxyribonucleotide synthase [NAD(+)] B)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03030
DNA replication
pfs03410
Base excision repair
pfs03420
Nucleotide excision repair
pfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFLU_5711
03410 Base excision repair
PFLU_5711
03420 Nucleotide excision repair
PFLU_5711
03430 Mismatch repair
PFLU_5711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfs03032
]
PFLU_5711
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_5711
Enzymes [BR:
pfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFLU_5711
DNA replication proteins [BR:
pfs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFLU_5711
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFLU_5711
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFLU_5711
MMR (mismatch excision repair)
DNA ligase
PFLU_5711
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFLU_5711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_2
DUF3701
Motif
Other DBs
NCBI-ProteinID:
CAI2799847
UniProt:
A0AA35N2Z1
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All DBs
Position
1:6261009..6262673
Genome browser
AA seq
554 aa
AA seq
DB search
MMHLLFALLLSALPCWVWAQACSDEARAHVSTLAEQIRQWDDSYHRLGQSPVSDELYDQA
RQRLAQWHQCFPAPTATPNTPLASSRGAQPHPVAHTGLEKLLDEHAVDAWLGTRKDVWIQ
PKVDGVAVTLVYQQGRLRQVISRGDGVMGHDWSASARKIPGIVQQLPDPIDLVLQGELYW
RLDDHVQSASGGLNARSKVAGLMNRKHLGDTDAAGIGLFVWAWPQGPAAFTERLSTLKRW
GFTDTQRFSQPIRNISEAAHWRAYWYGHPLPFASDGVVLHQAQHAPAERWQVSTPYWAAA
WKYPTTKALALVRDVQFKIGRTGRITPMLELEPVRLDDRQISRVSAGSLKRWQSLDIRPG
DHVSISLAGQVIPRLDEVILRSSTRADLPVPNPGKFHALSCWQLDPGCEEQLLARLSWLS
GNQGLALPHIGRETWSVLIQAGLIAGFLDWLTLDTAELANIDGFGDRTRARVVDSFHSAR
QRPFAQWLKALGVPPAARNNLEGDWQTLVARDTQAWLAIDGIGPGRAAQLSAFFRDPHVQ
ALAETLRVAGIDGF
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacttactgtttgcccttttactcagcgccctaccctgctgggtgtgggcccaa
gcgtgctccgatgaagcccgagcacacgtcagtaccctggccgaacagatacgccaatgg
gatgacagttaccaccggcttggccaatccccggtgagcgacgaactctacgaccaggcg
cgccagcgcctggctcagtggcatcagtgcttccccgcccccaccgcgacacccaacacc
ccactggcgagttcacgtggcgcccagcctcaccccgttgcgcatacaggcctggagaaa
ctgctggacgaacacgcagtcgacgcctggctgggcacacgaaaggatgtctggattcaa
cccaaggtggacggagtggcggtaaccctggtgtatcaacagggtcgcctgcgccaagtc
atcagccgaggcgatggtgtcatgggccacgactggtctgcctccgcgcgcaaaatcccc
ggcattgtccagcagttgcccgaccccatcgacctggtgctgcaaggcgaactctattgg
cgcctcgacgaccatgtgcaatcggccagcggcgggctcaatgcccgcagcaaggtggcc
gggttgatgaaccgcaaacacttgggcgacaccgatgccgccggcattggcctgttcgtc
tgggcttggccacaagggccggcagcctttaccgagcgcctttccacactgaaacgttgg
gggttcactgacacccagcgcttcagccagcccatccggaacatcagcgaagccgcgcac
tggcgcgcctattggtatggccatccactgccgttcgccagcgatggggtggtgttgcac
caggcgcagcacgcccctgccgagcgttggcaggtcagtaccccctactgggcggccgcc
tggaagtacccgacgaccaaggccctggcgctggtgcgcgacgtgcaattcaagatcggc
cgtaccgggcgcatcacacccatgctggaattggaaccggtgcgcttggatgaccggcag
atcagccgggtgagcgccggctcattgaagcgctggcaatcgctggatatccgccctggc
gaccacgtctccatcagcctggcgggccaggtgatccctcggctggatgaggtcatcctg
cgcagcagcacaagggcggacttgcccgtgcccaatccggggaaattccatgccttgagt
tgctggcaactggaccccggttgcgaggagcagttgctggcgcgcctttcctggctgagc
ggcaaccagggcctcgccttgccacacataggccgcgaaacctggagcgtattgatccag
gccggtctaatcgcaggctttctcgattggttaaccctggatacggcagagcttgctaac
attgatggcttcggtgatcgcacccgtgcgcgcgtggtcgacagcttccacagcgcgcgg
caacggcccttcgcacaatggctcaaggccttgggtgtaccgcctgcggcacgtaataac
ctggaaggcgactggcagacgctggtcgccagagacacccaggcctggctggccatcgat
ggcatcggcccgggccgcgcagcgcaactgagcgctttttttcgcgacccgcacgtacag
gccttggctgaaacattacgcgtggcggggatagacggtttttga
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