Pseudomonas fuscovaginae: NLK61_22640
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Entry
NLK61_22640 CDS
T10659
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfuv Pseudomonas fuscovaginae
Pathway
pfuv03030
DNA replication
pfuv03410
Base excision repair
pfuv03420
Nucleotide excision repair
pfuv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfuv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLK61_22640 (ligA)
03410 Base excision repair
NLK61_22640 (ligA)
03420 Nucleotide excision repair
NLK61_22640 (ligA)
03430 Mismatch repair
NLK61_22640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfuv03032
]
NLK61_22640 (ligA)
03400 DNA repair and recombination proteins [BR:
pfuv03400
]
NLK61_22640 (ligA)
Enzymes [BR:
pfuv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NLK61_22640 (ligA)
DNA replication proteins [BR:
pfuv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NLK61_22640 (ligA)
DNA repair and recombination proteins [BR:
pfuv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NLK61_22640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLK61_22640 (ligA)
MMR (mismatch excision repair)
DNA ligase
NLK61_22640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLK61_22640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UUQ64021
LinkDB
All DBs
Position
4975412..4977769
Genome browser
AA seq
785 aa
AA seq
DB search
MTVAQTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLYHELKALEAEHPELVTADSPTQ
RVGSAALTAFTQVRHEIPMLSLGNAFEEIDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG
EVFMSKAGFERLNETQLEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSA
DIADSHIGNLQQLKAWGMPISHELKLAKGIDECLDYYRAIGERRNALPYEIDGVVFKVNS
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDSVIIRRAGDVIPQVVQVVTERRPENARAVQIPESCPVCGS
HVERTQLIKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKTIEQ
LVDENLIASPADLYTLKREDIVDLEGFAELSTSNLLQAIADSKQPSLARFIYALGIPDVG
EETAKVLARSLGSLERVMQALPAVLTYLPDIGLEVAHEIHSFFEDEHNRTVIGQLLERGL
VLQDQGELGAEFAASTTLGGLIAKLDISSVGPTAAEKLAAKFGSVEGIINADWLDLRQAL
NEKPAKAVREFFDVPANAERALAIEAQLRDFGMHWQSEKKTVEGLPLTGQTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVSFLKT
HGIEA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcgcccagacccgtattctagagctgcgtgctgaactggatcagcacaactac
cgctaccacgtgctcgacgaaccgagcatcccggacgccgaatacgatcgcttgtaccac
gagctcaaggccctggaagccgaacacccggaactggtcaccgccgactcgccgacccag
cgcgtcggcagcgcggcgttgaccgcgttcacccaggtccgccatgaaatcccgatgctg
agcctgggcaacgccttcgaagaaatcgacatgcgcgaattcgatcgccgcgtcaccgaa
ggcctcgacctgccggccggtgacctgttcgggggtggcgccgccgtcgaatacagctgt
gaaccgaaactcgatggcctggcggtcagcctgctgtaccaggacggcctgctggtgcgc
ggcgctacccgtggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaacattccgctcaagctgcagggcagcggttggccggcgaccctcgaagtacgcggc
gaagtgttcatgtccaaggccggcttcgaacgcctcaacgaaacgcaactggaggcgggc
ggcaagaccttcgccaacccgcgcaacgccgcagcgggcagcttgcgccagctcgactcg
aagatcaccgccagccgtccgctggagttctgctgctacgggctgggccaggtctcggcc
gacatcgccgacagccacatcggcaacctgcagcaactcaaggcctggggcatgcccatc
agtcatgaactgaaactggccaagggcatcgacgaatgcctggactactaccgcgccatc
ggcgagcgccgcaacgcgctgccctatgaaatcgacggcgtggtgttcaaggtcaacagc
ctggcgtcccagcgcgaactgggctttcgtgcccgcgaaccgcgctgggcgattgcccac
aagttcccggcgatggaagagctcaccgagctgctcgacgtggagttccaggtcggtcgt
accggcgcggtcaccccggtggcccgcctcaagccggtcaaggtcgctggcgtcaccgtc
tccaacgccaccctgcacaacatggacgaagtcgcgcgcctggggctgatgatcggcgac
agcgtgatcatccgccgcgccggtgacgtgattccgcaggtggttcaggtggtcaccgag
cgccgtccggaaaacgcccgcgcggtgcagattcccgagagctgcccagtgtgcggctcc
cacgtcgagcgcacccagctgatcaagcgcagcaagggccgcgaaaccgtcagcgaaggc
gcggtgtaccgctgcgtcggccgcctggcctgcggcgcgcaactcaagcaggcgatcatc
cacttcgtctcccgccgcgcgatggacatcgaaggcctgggtgacaagaccatcgaacaa
ctggtggatgaaaacctgatcgcctcgccggccgacctctacaccctcaagcgcgaagac
atcgtcgacctcgaaggtttcgccgagctgtcgaccagcaacctgctgcaagccatcgcc
gacagcaagcagccgagcctggcgcgcttcatctacgccctgggcattcccgatgtgggc
gaggagaccgccaaggtcctggcgcgctccctgggctcactggagcgggtgatgcaggcg
ttgccggccgtgctgacctacctgccggacatcggcctggaagtggcccacgagatccac
agcttcttcgaagacgaacacaaccgcacggttatcggccaactgctcgagcgcggcctg
gtgctgcaggatcagggcgaactgggcgccgaattcgctgccagcaccaccctgggtgga
ttgatcgccaagctcgacatcagctcggtgggcccgacggcggcggagaaactagcggcc
aagttcggctcggtcgaaggcatcatcaacgccgactggctggacttgcgccaggcgctg
aacgaaaagccggcgaaggcggtacgggagttcttcgatgtaccggccaatgccgaacgg
gcgctggcgatcgaagctcaactgcgcgatttcggcatgcattggcagagcgagaaaaag
accgtggaaggcctgccgctgaccggccagacctgggtactgaccggctcgctggaactg
atgagccgcgatgtggccaaggacaagctggaaagcctgggcgccaaggtggcgggttcc
gtttcggccaagacccattgcgtggtcgcaggcccgggcgccggctcaaaactggccaag
gccaacgaactgggcctcaaggtgctggatgaagaggcgttcgtcagcttcctgaaaacc
cacggtatcgaagcctga
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