KEGG   Pseudomonas furukawaii: KF707C_36280
Entry
KF707C_36280      CDS       T07047                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pfuw  Pseudomonas furukawaii
Pathway
pfuw03030  DNA replication
pfuw03410  Base excision repair
pfuw03420  Nucleotide excision repair
pfuw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pfuw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KF707C_36280
   03410 Base excision repair
    KF707C_36280
   03420 Nucleotide excision repair
    KF707C_36280
   03430 Mismatch repair
    KF707C_36280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfuw03032]
    KF707C_36280
   03400 DNA repair and recombination proteins [BR:pfuw03400]
    KF707C_36280
Enzymes [BR:pfuw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     KF707C_36280
DNA replication proteins [BR:pfuw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     KF707C_36280
DNA repair and recombination proteins [BR:pfuw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     KF707C_36280
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     KF707C_36280
   MMR (mismatch excision repair)
    DNA ligase
     KF707C_36280
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      KF707C_36280
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT Bep_C_terminal
Other DBs
NCBI-ProteinID: BAU75316
LinkDB
Position
complement(3945779..3948154)
AA seq 791 aa
MTDAQTAAERINALRAELDAHNYRYYVLDQPSVPDAEYDRLFRELQALEAEHPELVTPES
PTQRVSGAALAAFGEVRHEVPMLSLGNAFEEQDLLDFDRRVREGLGELLPGGDLFGDGPE
VEYTCEPKLDGLAVSLLYENGLLVRGATRGDGSTGEDISGNVRTIRNLPLKLQGQGWPAV
LEVRGEVFMSRAGFEALNARQAEAGGKTFANPRNAAAGSLRQLDARITASRPLEFCAYGF
GRVEGELPDNQFDILQALKGWGLPISRELKRVKGAQGCLAYYRDIGERRDSLAYEIDGVV
YKLNNLAWQRELGFRAREPRWALAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQV
AGVTVSNATLHNMDEVARLDLRIGDTVIVRRAGDVIPQVMQVVLERRPAEARPVHIPEQC
PVCGSAVERTQLVKRGKGRETVSEGAIYRCVGRLACGAQLKQAIIHFASRRALDIEGLGD
KIVEQLVDTGLVASPADLYTLKYEQVVELEGFADLSTRNLLAAIADSRKPTLARFIYALG
IPDVGEETAKLLARALGSLERIQQALPDVLTYLPDVGLEVAHEIHAFFSDEHNQRVISDL
LARGVELQEEGGLSPEFAACATFAGFIDKLNIAGIAATGAKNLAEKAGSLEGLVALSRDW
LELSVMKGVNEKAKQALREFFAQPEQVQRAQAIEAQLRDFGMHWESEKKAVEGLPLAGQT
WVLTGTLEVMTREAAKEKLETLGAKVAGSVSARTHCVVAGPGAGSKLAKANELGVRVLDE
QQFLAELETLG
NT seq 2376 nt   +upstreamnt  +downstreamnt
atgaccgacgcccaaaccgccgctgaacgcatcaacgccctgcgcgccgagctggatgca
cacaactaccgctactacgtgctggatcaacccagcgtgccggatgccgagtacgatcgc
ctgttccgcgagttgcaggccctggaggctgagcacccggagctggtgacgccggaatcc
cccacccagcgggtcagcggcgcggccttggcggcgttcggcgaggttcgccatgaagtg
ccgatgctgagtctcggcaacgccttcgaggagcaggacctgctggatttcgaccgtcgg
gtccgcgagggactcggggagctgctgccggggggcgatctgttcggcgatggtcccgag
gtggagtacacctgcgagcccaagctcgatggcctggcagtcagcctgctatacgagaac
ggcttgctggtgcgcggcgccacccgtggcgatggcagcaccggcgaggacatcagcggc
aacgtccgcaccatccgcaatctgcccctgaagcttcagggccagggctggcccgccgtg
ctggaggtgcgtggcgaggtgttcatgtccagggccggtttcgaggcgttgaatgcgcgc
caggccgaggccggcggcaagaccttcgccaacccgcgcaacgccgccgccggcagcctg
cgtcagctggatgcgaggatcaccgccagccgcccgctggagttctgcgcctacggtttc
ggccgggtggagggcgagttgccggacaaccagttcgacattctccaggcgctcaagggc
tgggggctgcccatcagccgtgagctgaagcgggtgaagggcgcccagggttgcctggcg
tactaccgcgacatcggcgagcgccgggacagcctggcctacgagatcgatggcgtggtg
tacaagctcaacaacctcgcctggcagcgtgaactgggcttccgggcccgcgagccgcgc
tgggcgctggcgcacaagttcccggcccgggaggaactcaccgagttgctggacgtggag
ttccaggtgggacgcaccggcgcggtgacgccggtggcgcggctcaagccggtgcaggtg
gcgggtgtcaccgtctccaatgcgacgctgcacaacatggacgaagtggcgcgcctggac
ctgcgcatcggcgataccgtcatcgtccgccgcgccggcgacgtgattccgcaagtgatg
caggtggtgctcgaacgtcgtcccgccgaggcccgtccggtgcatattcccgagcagtgc
ccggtctgcggttcggcggtggagcgtacccagctggttaagcgcggcaagggcagggaa
accgtcagcgaaggcgccatctaccgttgcgtcggccgcctggcctgcggcgcccagctg
aagcaggcgatcattcacttcgcttcccgccgtgccctggatatcgaggggctgggggac
aagatcgtggagcaactggtggacaccggcctggtggcgtcccctgcggacctctacacc
ctgaagtacgagcaggtggtggagctggagggtttcgccgacctctccacccgcaacctg
ctggcggccatcgcagacagccgcaagcccaccctggcgcgtttcatctacgccctgggg
attcccgatgtgggtgaggaaaccgccaagcttctggcccgcgccctgggttccctggag
cgtatccagcaggccctgccggatgtcctcacctacctgccggacgtgggcctggaagtg
gcccacgagatccacgccttcttctccgacgaacacaaccagcgggtgatttccgacctg
ctggcgcggggcgtcgagttgcaggaggagggcggcctcagccccgagttcgccgcctgc
gcgaccttcgccggtttcatcgacaagctgaacatcgccggtatcgcggccaccggcgcg
aagaacctggcggagaaggccggcagcctggaaggcctggtggccctcagtcgcgactgg
ctcgagctcagcgtgatgaagggcgtgaacgagaaggccaagcaggcactgcgggagttc
ttcgcgcagccggagcaggtgcaacgagctcaggccatcgaggcccagttgagggatttc
ggcatgcactgggagagcgagaagaaggccgtggagggcctgccactggccggtcagacc
tgggtgttgaccggcaccctcgaggtgatgacccgcgaggccgccaaggagaagctggag
accctgggcgccaaggtggcgggctcggtgtcggcgcggacccactgcgtggtggccggg
ccgggggcgggctcgaagctggccaaggccaacgaactgggtgttcgcgtgctggatgag
cagcagttcctggcggaactggagaccctgggctga

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