Pseudomonas furukawaii: KF707C_36280
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Entry
KF707C_36280 CDS
T07047
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfuw
Pseudomonas furukawaii
Pathway
pfuw03030
DNA replication
pfuw03410
Base excision repair
pfuw03420
Nucleotide excision repair
pfuw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KF707C_36280
03410 Base excision repair
KF707C_36280
03420 Nucleotide excision repair
KF707C_36280
03430 Mismatch repair
KF707C_36280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfuw03032
]
KF707C_36280
03400 DNA repair and recombination proteins [BR:
pfuw03400
]
KF707C_36280
Enzymes [BR:
pfuw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KF707C_36280
DNA replication proteins [BR:
pfuw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KF707C_36280
DNA repair and recombination proteins [BR:
pfuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KF707C_36280
NER (nucleotide excision repair)
GGR (global genome repair) factors
KF707C_36280
MMR (mismatch excision repair)
DNA ligase
KF707C_36280
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KF707C_36280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
BAU75316
LinkDB
All DBs
Position
complement(3945779..3948154)
Genome browser
AA seq
791 aa
AA seq
DB search
MTDAQTAAERINALRAELDAHNYRYYVLDQPSVPDAEYDRLFRELQALEAEHPELVTPES
PTQRVSGAALAAFGEVRHEVPMLSLGNAFEEQDLLDFDRRVREGLGELLPGGDLFGDGPE
VEYTCEPKLDGLAVSLLYENGLLVRGATRGDGSTGEDISGNVRTIRNLPLKLQGQGWPAV
LEVRGEVFMSRAGFEALNARQAEAGGKTFANPRNAAAGSLRQLDARITASRPLEFCAYGF
GRVEGELPDNQFDILQALKGWGLPISRELKRVKGAQGCLAYYRDIGERRDSLAYEIDGVV
YKLNNLAWQRELGFRAREPRWALAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQV
AGVTVSNATLHNMDEVARLDLRIGDTVIVRRAGDVIPQVMQVVLERRPAEARPVHIPEQC
PVCGSAVERTQLVKRGKGRETVSEGAIYRCVGRLACGAQLKQAIIHFASRRALDIEGLGD
KIVEQLVDTGLVASPADLYTLKYEQVVELEGFADLSTRNLLAAIADSRKPTLARFIYALG
IPDVGEETAKLLARALGSLERIQQALPDVLTYLPDVGLEVAHEIHAFFSDEHNQRVISDL
LARGVELQEEGGLSPEFAACATFAGFIDKLNIAGIAATGAKNLAEKAGSLEGLVALSRDW
LELSVMKGVNEKAKQALREFFAQPEQVQRAQAIEAQLRDFGMHWESEKKAVEGLPLAGQT
WVLTGTLEVMTREAAKEKLETLGAKVAGSVSARTHCVVAGPGAGSKLAKANELGVRVLDE
QQFLAELETLG
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcccaaaccgccgctgaacgcatcaacgccctgcgcgccgagctggatgca
cacaactaccgctactacgtgctggatcaacccagcgtgccggatgccgagtacgatcgc
ctgttccgcgagttgcaggccctggaggctgagcacccggagctggtgacgccggaatcc
cccacccagcgggtcagcggcgcggccttggcggcgttcggcgaggttcgccatgaagtg
ccgatgctgagtctcggcaacgccttcgaggagcaggacctgctggatttcgaccgtcgg
gtccgcgagggactcggggagctgctgccggggggcgatctgttcggcgatggtcccgag
gtggagtacacctgcgagcccaagctcgatggcctggcagtcagcctgctatacgagaac
ggcttgctggtgcgcggcgccacccgtggcgatggcagcaccggcgaggacatcagcggc
aacgtccgcaccatccgcaatctgcccctgaagcttcagggccagggctggcccgccgtg
ctggaggtgcgtggcgaggtgttcatgtccagggccggtttcgaggcgttgaatgcgcgc
caggccgaggccggcggcaagaccttcgccaacccgcgcaacgccgccgccggcagcctg
cgtcagctggatgcgaggatcaccgccagccgcccgctggagttctgcgcctacggtttc
ggccgggtggagggcgagttgccggacaaccagttcgacattctccaggcgctcaagggc
tgggggctgcccatcagccgtgagctgaagcgggtgaagggcgcccagggttgcctggcg
tactaccgcgacatcggcgagcgccgggacagcctggcctacgagatcgatggcgtggtg
tacaagctcaacaacctcgcctggcagcgtgaactgggcttccgggcccgcgagccgcgc
tgggcgctggcgcacaagttcccggcccgggaggaactcaccgagttgctggacgtggag
ttccaggtgggacgcaccggcgcggtgacgccggtggcgcggctcaagccggtgcaggtg
gcgggtgtcaccgtctccaatgcgacgctgcacaacatggacgaagtggcgcgcctggac
ctgcgcatcggcgataccgtcatcgtccgccgcgccggcgacgtgattccgcaagtgatg
caggtggtgctcgaacgtcgtcccgccgaggcccgtccggtgcatattcccgagcagtgc
ccggtctgcggttcggcggtggagcgtacccagctggttaagcgcggcaagggcagggaa
accgtcagcgaaggcgccatctaccgttgcgtcggccgcctggcctgcggcgcccagctg
aagcaggcgatcattcacttcgcttcccgccgtgccctggatatcgaggggctgggggac
aagatcgtggagcaactggtggacaccggcctggtggcgtcccctgcggacctctacacc
ctgaagtacgagcaggtggtggagctggagggtttcgccgacctctccacccgcaacctg
ctggcggccatcgcagacagccgcaagcccaccctggcgcgtttcatctacgccctgggg
attcccgatgtgggtgaggaaaccgccaagcttctggcccgcgccctgggttccctggag
cgtatccagcaggccctgccggatgtcctcacctacctgccggacgtgggcctggaagtg
gcccacgagatccacgccttcttctccgacgaacacaaccagcgggtgatttccgacctg
ctggcgcggggcgtcgagttgcaggaggagggcggcctcagccccgagttcgccgcctgc
gcgaccttcgccggtttcatcgacaagctgaacatcgccggtatcgcggccaccggcgcg
aagaacctggcggagaaggccggcagcctggaaggcctggtggccctcagtcgcgactgg
ctcgagctcagcgtgatgaagggcgtgaacgagaaggccaagcaggcactgcgggagttc
ttcgcgcagccggagcaggtgcaacgagctcaggccatcgaggcccagttgagggatttc
ggcatgcactgggagagcgagaagaaggccgtggagggcctgccactggccggtcagacc
tgggtgttgaccggcaccctcgaggtgatgacccgcgaggccgccaaggagaagctggag
accctgggcgccaaggtggcgggctcggtgtcggcgcggacccactgcgtggtggccggg
ccgggggcgggctcgaagctggccaaggccaacgaactgggtgttcgcgtgctggatgag
cagcagttcctggcggaactggagaccctgggctga
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