Pseudomonas fulva: Psefu_2622
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Entry
Psefu_2622 CDS
T01501
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfv
Pseudomonas fulva
Pathway
pfv03030
DNA replication
pfv03410
Base excision repair
pfv03420
Nucleotide excision repair
pfv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Psefu_2622
03410 Base excision repair
Psefu_2622
03420 Nucleotide excision repair
Psefu_2622
03430 Mismatch repair
Psefu_2622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfv03032
]
Psefu_2622
03400 DNA repair and recombination proteins [BR:
pfv03400
]
Psefu_2622
Enzymes [BR:
pfv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Psefu_2622
DNA replication proteins [BR:
pfv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Psefu_2622
DNA repair and recombination proteins [BR:
pfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Psefu_2622
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psefu_2622
MMR (mismatch excision repair)
DNA ligase
Psefu_2622
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Psefu_2622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEF22587
UniProt:
F6AG94
LinkDB
All DBs
Position
complement(2823870..2826236)
Genome browser
AA seq
788 aa
AA seq
DB search
MKDSAQRILELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPDSPTQ
RVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQNGLGVQGGDLFGGGAEVEYSC
EPKLDGLAVSLLYRDGKLVRGATRGDGTTGEDISVNVRTIRNVPLKLQGSGWPDVLEVRG
EVYMSRAGFERLNAAQAEIGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQHSA
EPAPTQVGMLQRLKSWGIPISPELKLAKGVEDCLAYYRDIGERRMGLPYDIDGVVFKVNN
IEDQQQLGFRARTPHWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVMQVVTERRPENARPVAVPEQCPVCGS
AVERTQLIKRSKGRETVSEGAVYRCVGRLACAAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVGSPADLYTLEFDQVVGLEGFAEVSSNKLLKAIADSKRPSLARFIYALGIPDVG
EETAKVLARSLGSLERVTQALPEVLTYLPDIGLEVAHEIHSFFEDAHNQTVIRHLLERGL
ELQDQGELAAEFAASTTLGGLLDKLNIPFVAATGAKNLAERFKTLEAVITADWLDLSAMK
GLNEKAKQSVREFFANADNANRARAIETQLRDFGMHWESEKKVVEGLPLAGQTWVLTGSL
EVMSRDVAKDKLESLGAKVAGSVSAKTTCVVAGPGAGSKLAKATELNIPVLDEQAFIARL
GDYGIAAE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaaagattccgctcaacgtatcctcgaactgcgtaacgaactggacgcgcacaactac
cgctactacgtgctcgacgagccgagtgtgccggacgccgaatatgaccgcctgttccgc
gaactgcaggccctcgaagccgagcacccggaactggtgacgcccgattcgccgacccag
cgcgttggcggtgaagcgcttagcgcctttggcgaggtgcgccacgaagtgcccatgctc
agtcttggcaacgccttcgaagaggatgacctgcgggctttcgaccgcagcgtgcagaac
ggcctcggcgtgcagggcggcgatctgttcggtggcggtgccgaggtcgaatacagctgc
gagcccaagctcgacggcctggcggtgagcctcttgtatcgcgacggcaagctggtacgc
ggcgccacccgcggcgacggcaccaccggcgaggacatcagcgtcaacgtgcgcaccatt
cgcaacgtgccgctcaaactgcagggcagcggctggccggacgtgctggaagtccgtggc
gaggtgtacatgtcccgcgccggtttcgaacgtctcaacgctgcccaggccgagatcggt
ggcaagaccttcgccaaccctcgcaatgccgcggccggcagcctgcgccagctggattcg
aagatcaccgccagccgtccgctggaattctgctgctacggccttggccaacacagcgcc
gagccggcgccgacccaggtcggcatgctgcaacgcctgaagagctggggcattcccatc
agccccgaactgaagctggccaagggcgtggaggattgtctcgcctactatcgcgacatt
ggcgagcgacgcatgggcctgccctatgacatcgacggcgtggtgttcaaggtcaacaac
atcgaagaccagcagcagctcggctttcgcgcccgtacgccgcattgggccatcgcccat
aagtttcccgccatggaagagctcaccgagttgctcgacgtggaattccaggttggccgt
accggtgcggtaacgccggtggcgcgccttaagccggttaaggtggccggcgtgacggta
tccaacgccacgttgcacaacatggacgaggtggcgcgcctcggggtgatgatcggcgac
acggtgatcatccgccgcgccggtgacgtgattccccaggtcatgcaggtggtcaccgaa
cgtcgtcccgagaacgcgcgcccagtggcggtgccggagcagtgcccggtgtgcggctcg
gcggtggagcgtacccaactgatcaaacgcagcaagggccgcgaaaccgtcagcgaaggc
gccgtgtatcgttgcgtcggccgcctggcctgcgccgcccagctcaagcaggcgatcatc
catttcgtctcgcgccgtgccatggatatcgaaggcctcggcgagaagagcgtcgagcaa
ctggtggacgagggcctggtcgggtcgccggccgatctctacacccttgaattcgatcag
gtcgttggtctggaaggcttcgccgaggtatccagcaacaaactgctcaaggccatcgct
gacagcaagcgcccgagcctggcgcgcttcatttacgccctcggtattcccgatgtgggt
gaagagaccgccaaggtgctggcgcgctccctggggtcgctggagcgcgtcacccaggca
ttgccggaagtactgacctacctgccggacatcggtctggaggtggcccacgagattcat
agcttcttcgaggacgcgcacaaccagacggtgatcaggcacctgctcgaacgtggcctt
gagctgcaggaccagggcgagctggcggccgaattcgccgccagcaccacgctcggcggg
ttgctagacaagttgaatattccgttcgtggcggccaccggtgcgaagaacctggctgag
cgcttcaagacgctggaggcggtgatcaccgctgactggctcgacctcagcgccatgaag
gggctcaacgagaaggccaaacaatcggtgcgcgagttcttcgccaacgccgataacgcc
aatcgtgcgcgggccatcgagacgcagctgcgtgacttcggcatgcactgggagagcgag
aagaaggtcgtcgaaggcctgccgctggccggccagacctgggtactgaccggcagcctg
gaagtgatgagccgcgatgttgccaaggacaagctggaaagcctgggcgccaaggtggcc
ggctcggtatcggcgaaaaccacctgcgtggtcgccggccccggcgccggctcgaagctg
gccaaggctaccgagctgaacattccggtgctggatgagcaggcgtttattgccagactg
ggtgattacggtatcgctgctgagtag
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