Pseudomonas simiae PCL1751: PF1751_v1c40970
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Entry
PF1751_v1c40970 CDS
T03766
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03030
DNA replication
pfw03410
Base excision repair
pfw03420
Nucleotide excision repair
pfw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PF1751_v1c40970 (ligA)
03410 Base excision repair
PF1751_v1c40970 (ligA)
03420 Nucleotide excision repair
PF1751_v1c40970 (ligA)
03430 Mismatch repair
PF1751_v1c40970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfw03032
]
PF1751_v1c40970 (ligA)
03400 DNA repair and recombination proteins [BR:
pfw03400
]
PF1751_v1c40970 (ligA)
Enzymes [BR:
pfw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PF1751_v1c40970 (ligA)
DNA replication proteins [BR:
pfw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PF1751_v1c40970 (ligA)
DNA repair and recombination proteins [BR:
pfw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PF1751_v1c40970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PF1751_v1c40970 (ligA)
MMR (mismatch excision repair)
DNA ligase
PF1751_v1c40970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PF1751_v1c40970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
Motif
Other DBs
NCBI-ProteinID:
AJP53792
LinkDB
All DBs
Position
complement(4557374..4559731)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPAGDLFGSGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLQKWGMPISRELKLAKGIQDCLEYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLERRPENARAVPIPQSCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEHIIDLEGFADISSKKLITAIENSKSPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPEECGL
QLQDQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQAL
PEKQAKAVREFFDNADNAHRALAIEQQLKDFGMHWDSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKASELGLKVLDEEAFVAFLAR
NNIKV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgttaccacgtcctcgacgagccgagcattccggacgccgagtacgaccgtctgttccat
gagctcaaggccctggaagccgagcatccggacctggtcacgcgcgattctccgacgcag
cgggtcggcagtgcggcgttgtcggcgttcacccaggtcaagcatgagatccccatgctc
agcctcggcaacgcctttgacgaaaccaccatgctggaattcgatcgccgggtcaccgaa
ggcctcgacctgccggccggtgatctgtttggcagtggcgcggcggtggagtacagctgc
gaaccgaagctggatggcctggcggtcagcctgctgtatcaggacggcgaactggttcgc
ggcgccacccgtggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaatattccgttgaagctgcacggcagtggttggccggcgaccctggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgaacggctcaacgcctcgcagctggaagtcggc
ggcaagaccttcgccaacccgcgcaacgccgctgccggtagtttgcgtcagctggattcg
aagatcaccgccagccgtccgctggaattctgctgctacggtgtgaccactgatatcagc
gacacccatatcggcaacctgcaacagttgcagaaatggggcatgcccatcagccgtgag
ttgaagttggcaaagggtatccaggattgcctggagtactaccgcgatatcggcgagcgg
cgtaacagcctgccgtatgagatcgacggcgtggtgttcaaggtcaacagcatcgcttcc
cagcgagaactgggcttccgcgcccgtgaaccgcgctgggccatcgcgcataaattcccg
gccatggaagagctgactgagctgctagacgtggaattccaggttggtcgtactggcgcc
gtcacgccggtggcacgcctcaagccggtcaaggtcgcgggtgtcaccgtgtccaacgcg
accctgcacaacatggatgaagtggcgcgcctgggcgtgatgatcggtgataccgtgatc
atccgccgcgccggggatgtgatcccgcaggtggtctcagtggtgcttgagcggcgtccg
gaaaacgcccgtgcggtgccgatcccgcagagctgcccggtgtgtggttcccacgtggag
cgcacgcaactggtcaaacgcagcaagggcaaggaaaccgtcagcgagggcgcggtgtac
cgttgcgtcgggcgtctggcctgtggcgcgcagctcaagcaggcgattatccatttcgtc
tcacgccgcgccatggacattgacggcctgggcgacaaaaccatcgaacaactggtggat
gaaaaactcatcggctcgccggccgacctctacaaactcaagtacgaacacatcatcgac
ctggaaggctttgccgacatttccagcaagaagctgatcaccgccatcgaaaacagcaaa
tccccgaccctggcgcgctttatctatgcgctgggcattcctgatgtaggcgaggagacc
gccaaggtgctggcgcgctccctggcctccctggagcgcgtgcagaaggccttgcccgaa
gtgctgacgtacttgccggacgtgggcctggaagtggcgcatgagatccacagtttcttt
gaagacagccataaccaggacgtgatcggcgcgctgctgtcgccggaagagtgcggcctg
caattgcaggatcagggtgacctgagtgccgaattcgccgccagcaccacactgggcggg
ttgctcgacaagctgcacgtaccgagcgtcggcccgggcgccgcgcaaaagctggcggac
aagttcgtcaccctcgaaggcgtaatcaaggccgactggctggacatgcgccaggccctg
ccggagaaacaggccaaggccgtgcgcgagttcttcgataatgccgacaacgcccaccgc
gccctggccatcgagcagcagctcaaagacttcggtatgcattgggacagcgagaagaag
gtggtcgaaggcttgcccgaagccgggcacacctgggtactcaccggttcgctggagttg
atgagccgcgacgtggccaaggagaagctcgaaagcctgggcgccaaggtggcgggatct
gtgtcggcgaagacccactgcgtggtggctgggccgggcgccggttccaagctgaccaag
gccagcgaattgggcttgaaggtgctggatgaagaagccttcgtcgccttcctcgccagg
aacaacatcaaggtctga
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integrated database retrieval system
