Pseudomonas simiae PCL1751: PF1751_v1c51330
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Entry
PF1751_v1c51330 CDS
T03766
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03030
DNA replication
pfw03410
Base excision repair
pfw03420
Nucleotide excision repair
pfw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PF1751_v1c51330 (ligB)
03410 Base excision repair
PF1751_v1c51330 (ligB)
03420 Nucleotide excision repair
PF1751_v1c51330 (ligB)
03430 Mismatch repair
PF1751_v1c51330 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfw03032
]
PF1751_v1c51330 (ligB)
03400 DNA repair and recombination proteins [BR:
pfw03400
]
PF1751_v1c51330 (ligB)
Enzymes [BR:
pfw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PF1751_v1c51330 (ligB)
DNA replication proteins [BR:
pfw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PF1751_v1c51330 (ligB)
DNA repair and recombination proteins [BR:
pfw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PF1751_v1c51330 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PF1751_v1c51330 (ligB)
MMR (mismatch excision repair)
DNA ligase
PF1751_v1c51330 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PF1751_v1c51330 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_2
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AJP54825
LinkDB
All DBs
Position
5693057..5694721
Genome browser
AA seq
554 aa
AA seq
DB search
MMPLLLALLLSILPFRGWAEECPDTARAQVNTLTEQIRLWDDSYHRLNQSPVSDELYDQA
RQRLTHWRRCFPESPPKPDNPLASSRGTLRHPIAHTGLEKLLDEQAVGAWLSTRQDVWIQ
PKVDGVAVTLVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPEPIDLVLQGELYW
HLDDHVQSANGGLNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTERLAALARW
GFTDSRRYSQPIRDIAEATHWRAYWYNHPLPFASDGVVLHQAQRPPARRWKASEPYWAVA
WKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQLDDRQISRVSAGSLKRWQTLDIRPG
DQVSISLAGQVIPRLDEVILRNAHRADLAAPDPRDFHALSCWQLDPGCEEQLLARLTWLS
GNQGLALPHIGRETWNVLIQAGLIASFLDWLTLDVAELANIEGFGDSSRTRVLESLNSAR
QRSFAQWLKALGVPPAARNNLEGDWQTLVARDTQAWLAIDGIGPGRAAQLSAFFRDPQVQ
ALADTLRVAGIDGF
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctttactgctagcgcttttactcagcattttacccttcagggggtgggccgaa
gagtgtcccgacacagcccgggcacaggtcaacacactgaccgaacagatacgcctctgg
gacgacagctaccaccgcctcaaccaatcccccgtcagcgacgaactctatgaccaggcg
cgccaacgtctgacccactggcgccggtgcttccctgagtcccccccgaaacccgacaac
cccctggcgagctcacgcggcaccctacgccaccccattgcccatacgggccttgagaaa
ctgctggatgaacaggcagtcggcgcctggctgagcacacgccaggatgtctggattcaa
cccaaggtggacggtgtggcggtgaccctggtgtatcgacaaggtcgcctgcgccaagtc
atcagccggggcgatggcctgatgggccacgactggtcggcgtccgcgcgcaggatcccc
ggcattgtccagcagttgccggagcccatcgacctggtgctgcaaggcgaactctattgg
cacctcgacgaccacgtgcaatcggcaaacggagggctcaatgcccgcagcaaggtggcc
gggctgatgaaccgcctcgaattgagcgacgccgacgccgccggcatcggtctgttcgta
tgggcatggcccgagggtccggggtcgtttaccgagcgtttggccgcattggcacgctgg
ggttttaccgacagccgacgctacagtcagcccattcgggatatcgccgaagccacgcac
tggcgcgcgtattggtacaaccatccactgccattcgccagcgatggggtggtgttgcac
caggcacagcgcccgcccgccagacgatggaaggccagcgaaccttattgggcggtcgcc
tggaagtatccggcggccaaagccctggcgctggtgcgcaacgtacgattcaagatcggt
cgcaccggacgcatcacacccatgcttgagctggaaccggtgcagttggatgaccgccag
atcagtcgtgtgagcgccgggtcattgaagcgttggcaaacgctggatatccgccctggc
gaccaggtctccatcagccttgcgggccaggtgatcccccgactggacgaggtcatcctg
cgaaatgctcatagggccgacttggcggcacctgaccctcgggactttcatgccttgagt
tgctggcaactggacccaggctgcgaagagcaactgctggcgcgcctcacctggttgagc
ggcaatcagggcctggcgttaccgcacataggtcgcgagacttggaacgtattgatccag
gccggtctaatcgcaagctttctcgattggttaaccctggatgtggcagagcttgctaac
attgagggcttcggtgatagcagccgtacgcgagtgctcgaaagcctcaacagcgcacga
cagcggtcctttgcacaatggctcaaagccttgggcgtaccacccgcggcacgcaacaac
ctggaaggcgactggcagacgctggtcgccagagacacccaggcctggctggccatcgat
ggcatcggcccgggccgcgcggcgcaactgagcgcctttttccgcgacccgcaagtacag
gccttggcagacacattacgcgtggccggcatcgatgggttttga
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