Pseudomonas lurida: A7318_25250
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Entry
A7318_25250 CDS
T04730
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfx
Pseudomonas lurida
Pathway
pfx03030
DNA replication
pfx03410
Base excision repair
pfx03420
Nucleotide excision repair
pfx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A7318_25250
03410 Base excision repair
A7318_25250
03420 Nucleotide excision repair
A7318_25250
03430 Mismatch repair
A7318_25250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfx03032
]
A7318_25250
03400 DNA repair and recombination proteins [BR:
pfx03400
]
A7318_25250
Enzymes [BR:
pfx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A7318_25250
DNA replication proteins [BR:
pfx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A7318_25250
DNA repair and recombination proteins [BR:
pfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A7318_25250
NER (nucleotide excision repair)
GGR (global genome repair) factors
A7318_25250
MMR (mismatch excision repair)
DNA ligase
A7318_25250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A7318_25250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_2
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AOE81777
LinkDB
All DBs
Position
5573589..5575253
Genome browser
AA seq
554 aa
AA seq
DB search
MMRLLYALLLIALPYGVWAEGCPDEARSQVGILAEQINQWDDGYHRLGQSPVSDELYDQA
RQRLTHWRQCFPESSVASDNPLASSRGTLPHPVAHTGLEKLLDEQAVGTWLGTRQDVWIQ
PKVDGVAVSLVYRHGRLSQVISRGDGAVGHDWSASARKIPGIVQQLPAPLDLVLQGELYW
RLDDHVQSVSGGVNARSKVAGLMNRKQLSDTDAAGIGLFVWAWPEGPAGFSERLATLARW
GFSDSRRYSQPIQNITEATHWRAYWYNHPLPFASDGVVLHQAQRAPAGRWQVSAPYWAVA
WKYPLGKALALVRDVQFNIGRTGRITPMLELEPVRLDDRQISRVSAGSLKRWQSLDIRPG
DQVSISLAGQVIPRLDEVILRSTTRAELPVPNPGKFHALSCWQLDPGCEEQLLARLTWLS
GNQGLALPHIGRETWNVLIQAGLIAGFLDWLTLDAAELANIDGFGDRSRARVLESLHSAR
QRPFAQWLKALGVPPAARNNLEGDWQTLVARDTQAWLAIDGIGPGRAAQLSAFFRDPHVQ
AMAETLRVAGIDGF
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtttactgtatgccctgttactcatcgccttgccctatggggtatgggccgaa
ggttgcccggatgaagcccgctcacaggtcggcatcctggccgaacagatcaaccagtgg
gatgacggttaccaccggctcggccaatcgcctgtcagcgatgaactctacgaccaggcg
cgccagcgcttgacccattggcgccagtgcttccccgaatctagcgtggcgtccgacaac
cccttggcgagttcacgcgggaccctgcctcaccccgtggcccataccggcctggaaaaa
ctcctggatgaacaggccgttggcacctggctgggcacacgccaggatgtctggattcaa
cccaaggtggatggtgtcgcggtgagcctggtgtatcgccacgggcgcctgagccaggtc
atcagccgaggcgatggggccgtgggccacgactggtctgcctctgcgcgcaagattccc
ggcatcgtccagcaactgcccgcccccctcgacctcgtgctgcaaggcgaactctattgg
cgtctggacgaccacgtgcaatccgtaagcgggggggtcaatgcgcgcagcaaggtggcc
gggctgatgaaccgcaagcaattgagcgacaccgatgccgctggcattggcctgttcgtc
tgggcctggccggaagggccggccgggtttagcgagcgcctggccacattggcacgctgg
ggcttcagtgatagccgtcgctacagccagcccatccagaacatcaccgaagccacgcac
tggcgcgcctattggtacaaccacccactgccattcgccagcgatggcgtggtgttgcac
caggcgcagcgcgcccccgccgggcgttggcaggtcagtgcaccctactgggcggtggcg
tggaagtacccgctcggcaaggccttggcgctggtgcgcgacgtgcaattcaacatcggc
cgcactgggcgcatcacgcccatgctcgagctggaaccggtgcgcctggatgaccgccag
atcagccgggtgagtgcaggttcattgaagcgttggcaatcgctggatatccgccctggc
gaccaggtatccatcagcctggcgggccaagtgattccacggttggacgaggtcatcctg
cgcagcaccacccgggcggagctgccagtgcccaaccctggaaaattccacgcattgagc
tgctggcaactggacccaggctgtgaggagcagttgctggcacgccttacctggctgagc
ggcaaccagggccttgccttgccacacataggccgcgagacctggaacgtattgatccag
gccggtctaatcgcaggctttctcgattggttaaccctggatgcggcagagcttgctaac
attgatggcttcggtgatcgcagccgtgcgcgagtgctagagagccttcacagcgcgcga
caacggccctttgcacaatggctcaaggccttgggcgtaccgcctgcggcacgtaacaac
ctggaaggcgactggcagacgctggtcgccagagacacccaggcctggctggccatcgat
ggcatcggcccgggccgcgcagcgcaactgagcgctttttttcgcgacccgcacgtacag
gccatggctgaaacattacgcgtggcggggatagacgggttttga
DBGET
integrated database retrieval system
