Pestalotiopsis fici: PFICI_09456
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Entry
PFICI_09456 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PFICI_09456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfy03400
]
PFICI_09456
Enzymes [BR:
pfy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PFICI_09456
DNA repair and recombination proteins [BR:
pfy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PFICI_09456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
mRNA_cap_enzyme
Glyco_transf_41
Hamartin
Motif
Other DBs
NCBI-GeneID:
19274469
NCBI-ProteinID:
XP_007836228
UniProt:
W3X0D7
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MPFPFRYICDLLQTLHDETRSKRAQKRPDKALVEDWFHKHRKLLDEPSTNGVAVLSTLLP
GNRPDRVYGIQVNRLQSIISRAMGLGISRLRVLQEYNTLPSSDKDLADCVEELLTNTPNP
KQLEEITVEEIDAALHHVASGCKFSSKEVQASRNKDGQTISLGDFYNRLTARDAKWFTRL
VLKDFAPVVMPETVVIKAYDYRLPEALAVREDFATAISLIREGGLASRPENLIKLGCKVA
RQPWYKAHSIKHCVGMIGTRQVSCEQKIDGEYCQIHIDLSKPRNQELKIYSKSGKESTKD
RKNLHPAIRASLNIGKKACPLKQGCILEGELVVYSDRDRKILPFHKIRKHVSRSGAFLGT
VGDSQRHDHEHLMIIYYDILMLDGTSFLGMQHSDRFQRLTKLITTRKGHAELIQRQIIDF
RRKDAQRLLLAAFAKCIVARGEGLVLKPDDPYFTFGRKKKRYASCAIKLKKAYIKGFGDV
GDFAVIGASHDARTAKSSKIENLKYTHFFLACLDNPTEAQARTHKPKYIVTNIVTLNDTQ
LKYFRQYCNPPMVRPEDHTSSEFDFRGLGNADRPTVIFSDPPVFDIYCFSFDKAPNSAMW
TMRFPQVSKIHLDRDFLDVLSFVQLQEAAHDAVEEPEMEDSQEMRLWLAKLEATDPERKC
LAYDSQSTVSTISTNQTASVVASTDSEAEGEQVQANPVVRPEDTPAAVAPQRGLITPPRS
SATHATAATNVGARGSTAPNTRSSSRKRSSTAVEVTSPSKKPKTNTQNRDIQTTKRKPLG
ARDANDSQRSTRSGRSVSPPLSIGELEATPPVEGHFPSSVTGSFYTANEPPSSPSGRTPR
KGRNAVGNGTMSKDESQVVERCRHVASKKRCAFKGCAFLLSPCIREYAWIDDLLKGHGIF
GFQTIPEVWARQASSRSSSAASTPRSGSPTPGSINSATKRREQRLCLVDSRRADATRDFI
KAIEVAGLTCRNGEREWISVYDWRILEDITSMESRAYRKGGPDPWRARYLGLA
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgccttttccctttcgatatatatgcgacctgctgcagactttgcacgacgaaactcgt
tccaaaagggcacagaaacgtccagacaaagcgcttgtcgaagattggtttcacaaacat
cgcaaactcctagatgagcccagcacaaatggcgttgcggttctctccacgctacttccg
ggcaaccgcccagaccgcgtctatggcatacaagtgaacaggctgcaaagtattatttca
cgagcaatgggcttgggtatctcgcgattgagagtgctacaagaatacaacactctcccc
agcagcgacaaagatctagcagactgtgtcgaagaattactgacaaacacgccgaaccct
aagcaattagaggagattacagtcgaagaaattgatgcagctcttcatcatgttgcctct
ggatgcaaattcagctcaaaggaggttcaggcttctcgtaacaaagatggccagacaata
agccttggcgacttctacaatcgcctcactgcccgcgatgccaagtggttcacccggctg
gtcctcaaggactttgcacccgttgtgatgcccgagactgttgtgatcaaagcatatgat
tacagattacccgaggctctagctgtccgcgaggattttgcaacggctatttccttgata
cgcgaaggcggcttggcctcaagaccagagaacttgatcaaactcggctgcaaggttgcg
cgacaaccctggtacaaggctcacagtatcaagcactgcgtgggcatgataggaacacgc
caagtgagctgcgagcagaagattgatggcgaatattgccagattcatattgatctgagc
aaaccccgaaatcaggaactcaagatctactccaaaagtggaaaggaaagcaccaaagat
cgcaaaaacttgcatcccgccattcgagcatcgttgaatatcgggaagaaagcctgtcca
ctcaagcaagggtgcatcttggaaggtgagctggtggtgtatagtgacagggaccggaag
atactcccttttcacaagattcggaaacacgtatcgagatctggtgcgttcttgggaaca
gttggagattcacagcgccatgatcatgagcatcttatgattatatactacgacatacta
atgctggatggtacatcctttctcggcatgcaacattcagatcgttttcaacggcttacc
aagctgatcacaacccgcaaaggccatgctgagttgattcagcgacagattatcgacttt
cgccggaaagacgcgcaaagactgctcttagcagcctttgcaaagtgcattgtagctcgt
ggagagggtttggtgctgaagccagatgatccttatttcacctttggccgtaaaaagaaa
cgctatgcatcgtgtgccatcaagctcaagaaggcatatatcaaaggtttcggtgacgtc
ggagactttgccgtcatcggtgcctcgcacgatgctagaacggcaaaaagctccaagatc
gagaacctcaagtatacgcacttcttcctggcatgcttggacaatcccactgaagcgcag
gcgagaacccataagcccaagtatattgtcacaaatatcgtaactttgaacgacacacag
ttgaaatattttcgacagtactgcaatcctcccatggtacggccagaggatcacacatcc
tcagagttcgattttcgaggcctcggaaacgctgatcggccgacggttatcttctccgat
ccacccgtcttcgacatctactgtttttcctttgataaagcacccaattcggccatgtgg
acaatgaggttcccccaggtcagtaagattcatctagacagagactttctagatgttctt
tctttcgttcagctgcaggaagctgcccatgatgctgtggaagagcccgaaatggaagac
agtcaggagatgcgattgtggctagccaagcttgaagcaacagaccccgagagaaaatgt
ttggcctatgatagccagtccacagtttcgactatctctacaaatcaaacagcttcagtc
gtggcctccaccgattccgaagccgagggcgaacaggtacaagcaaatcccgtcgtcaga
cctgaagacacgccagcggctgtagcgccgcagcggggcttgatcacgccgcctagatct
tcggctactcatgcaactgctgctactaatgttggagcaagaggtagtacggccccaaac
acaagatcgagcagccgaaaacggtcttcaacggcagtggaagtgacatcgccttcgaag
aaaccaaagacaaacacgcaaaatagagacattcagactaccaaaaggaagccacttggt
gctagagatgccaatgattcccagaggtcaaccaggtctggtcgtagcgtgtcgcctccg
cttagcattggggaactggaggcgacaccaccggtggaagggcactttccatcttcagtg
actggaagcttttataccgcaaacgagcctccgtcgtcaccttccggaagaactccacgc
aaaggcaggaacgctgttggcaacggaacaatgtcgaaagatgaatcgcaagttgtggag
agatgccgccatgtggcaagcaagaaaaggtgtgcctttaaaggctgtgctttcctgcta
tctccttgcatacgcgagtatgcttggattgatgatctcctcaaaggtcacggcatcttt
ggttttcagaccatcccagaggtctgggcaagacaggcgtcatctcgatcctcctcagcg
gcgagcacgccgagatctggtagcccaacacctgggtctatcaacagtgccactaagcga
agagaacaaagactctgcctggttgattcaagaagggctgatgcaactcgagattttatc
aaggcgattgaggtcgccgggttgacatgcagaaatggagagcgggagtggatctcggtc
tatgactggcggattttggaagacattacgagcatggagtcaagagcttacaggaaaggg
ggaccggacccgtggagggctcggtatctgggactggcatga
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integrated database retrieval system
