Pestalotiopsis fici: PFICI_13660
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Entry
PFICI_13660 CDS
T04924
Name
(RefSeq) U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFICI_13660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfy03041
]
PFICI_13660
Spliceosome [BR:
pfy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PFICI_13660
Complex C
U5 SnRNP specific factors
PFICI_13660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
DUF6716
Motif
Other DBs
NCBI-GeneID:
19278673
NCBI-ProteinID:
XP_007840432
UniProt:
W3WQS0
LinkDB
All DBs
Position
Unknown
AA seq
986 aa
AA seq
DB search
MDDLYDEFGNFIGEEAEASEEESEHGLDAGAYVYDDDQSEAAHEATGQELMEIDDGPSNA
VILHEDKQYYPTAQQVYGEDVETMVQEEDAQPLSQPIIAPPDTRKFTIEEADLPPVFYDR
GFMTDLMNYPDQIRNIALAGHLHHGKTAFMDMLVLETHDIQDRLERRTGKKRDEQLRYTD
ISVMERERGVSVKAAPMSLVLQSTKGKSHLVNIIDTPGHVNFVDEVAASLRLVDGVALVV
DVVEGVQVNTEQIIKHAVLEDLPLTLVVNKLDRLILELRLPPNDAYFKLKHVIEEVNTII
ENTVPGSGETKRLSPEKGNVLFACTEMGWCFTLQSFAKMYAESFPGVNTDEFARRLWGDV
YFNPKKRSFSRKPLPGEERAKRSFVHFIMEPIYKLFSASISQNPDELKGTLATLGISLKP
SQFKTDAKVILKLVCEQFFGPSTGFVDMIVQHIPSPAEGAQRELQQYYTGPLDTKVAEAM
KNCDQEGPLVVHVTKLFSAADGKSFSSLGRVMSGIAKPGMQVRVLGEGYSIDDEEDMVMA
TISGVSIAETRYNIPTDGVPAGNWALLSGIDNSIVKTATIVPPTLEDEEDAYIFRPITHF
TESVLKVAVEPINPSELPKMLDGLRKINKSYPLITTKVEESGEHIVLGTGELYMDCVLHD
LRRVFADMEIKVSDPVTRFCETVDEVSATKCYAITPNKKNKITMVAEPLDDGIAEDIESG
RVKMRDGTRKVAKFFEEKHGWDLLAARSIWAFGPDEMGPNILQDDTLPSEVDKKLLKTVR
ETIRQGFSWAAREGPLCEEPIRNTKFRIMDATLANEAIFRGGGQIIPTARRACYSSFLMA
SPRLMEPLYACDMTGPQDAVPVIYNVLARRRGHVLVDGPVAGTPLYRVQGLLPVIDSFGF
ETDVRIQTQGQANVSLVFDKWQKVPGDPLDKDVVLRPLQAADAQATARDFVLKTRRRKGL
SEDVSVAKFLEPEFYQSLIESGALDL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctctacgatgaatttggcaacttcattggcgaagaggccgaggcatctgag
gaagagtccgaacatggcttggatgccggcgcctacgtctacgatgacgaccagtcagag
gccgcacacgaggcgacgggccaggagctcatggagatcgatgatgggccctccaacgcc
gtgatactgcacgaggacaagcagtactacccaactgctcagcaggtctacggagaagat
gtagagaccatggtgcaggaggaggatgcgcaaccgctctcacagcccatcattgcgccc
ccggacacgcgcaagttcaccatcgaggaggccgacttgcccccagtcttttacgaccgt
ggtttcatgacagatctcatgaactatccggatcaaatacgcaacattgccctcgcaggc
cacctccaccacggcaagaccgccttcatggatatgctagttctcgaaacgcatgatata
caagataggttggagaggaggacaggaaagaagcgggatgagcagttgagatataccgac
atctcagtcatggagcgggaaagaggagtttcggtcaaggcagcacccatgagcttggtc
ttgcaaagcacaaaaggaaaatcgcaccttgtcaacatcatcgacacacccggacacgtc
aattttgttgacgaggtggcagcttccttgcgtctggttgacggtgtggctctggttgta
gacgtggtcgagggtgttcaggtcaatactgagcagatcatcaagcatgccgttctggag
gacctcccgctgaccttggtcgtcaacaagctcgatcgcctgatcttggaattgcgactt
ccccccaatgatgcgtacttcaaactgaagcacgttattgaagaagtaaacaccattata
gagaataccgttcctggctcaggggagacgaaacggttgagccctgaaaagggcaatgtt
ctctttgcctgcaccgagatgggttggtgcttcacgcttcagtcctttgccaagatgtat
gccgaaagcttcccgggagtcaacacggacgagtttgccaggcgtctctggggtgacgtt
tacttcaacccaaagaagaggtcctttagtcggaaacccctgccgggtgaagaacgtgcc
aagagatcattcgtccatttcatcatggagcccatctacaagctcttttcggcctccatt
agtcagaatcctgatgagctcaaaggcacattggcaacgttgggcatatcactgaagcca
tcgcagttcaagactgatgctaaagtcatccttaagttggtgtgcgagcaattctttgga
ccatctaccggcttcgtcgacatgattgtgcagcacattccttcgccggccgaaggcgct
caacgagaattacaacagtactacactggaccactagatacaaaggtggccgaagccatg
aagaactgtgatcaggagggcccattggtggttcacgtcacaaaactcttcagtgcggcc
gatggcaagagcttttcgtccttgggtcgtgtcatgagcggtatcgcaaagccaggcatg
caagtacgggtgctgggtgaaggttactctatcgacgatgaggaggacatggtcatggca
acgatatcaggggtcagcattgctgagacaagatacaacattcccacagatggtgttccc
gctggtaactgggcattgctgagtggtattgacaactcgatcgtcaagacagcaaccatt
gtgccgccgacactcgaagacgaagaggatgcatacattttcagaccaatcacacatttc
accgagtcagtcttgaaggtggcggttgagcctatcaacccatccgaattgcccaagatg
ttggacggtctccgcaagatcaacaagagctatcctctgatcaccaccaaggtcgaagag
tctggcgagcacattgtcctcggcacgggagagctgtacatggactgcgtgcttcatgat
ctgcggcgcgtctttgcagacatggaaatcaaggtgtctgacccagtgacccgattttgt
gagacggtcgacgaggtctcagccaccaagtgttacgccattacgccaaacaagaaaaac
aagattaccatggtcgccgagcctcttgatgacggtattgcggaggatattgagagcgga
cgcgtcaagatgcgagacgggacgcgcaaagtggccaagttctttgaggaaaagcatggg
tgggatctactggcggcacgaagcatctgggcatttgggccagatgaaatgggcccgaat
atcctgcaggacgacacactcccatcagaggtcgataagaaacttctcaagacggtgcga
gaaactatccgccaagggttcagttgggcagcccgcgagggaccgttatgcgaagaaccg
atccgcaataccaagttccgcatcatggacgccactctggccaacgaggcaatttttagg
ggaggtggtcagattatccccacagctcgtagggcctgctactcgtcgttcctgatggcc
agcccgcggctcatggaaccgttgtatgcttgcgacatgacgggaccacaggatgcagtg
cccgtgatctacaacgtgctcgcacgccgccgtggccacgttttggttgacggacccgtg
gcgggaactccgctgtaccgcgtccagggtctgctgccagtcattgactcctttggattc
gagacagacgtgcggatccaaactcagggacaggcaaacgtaagtctggtgtttgacaag
tggcagaaggtgcctggagatcctctagacaaggatgttgttcttcggccactacaagca
gccgatgctcaggctaccgccagagactttgtgctcaagacgagaaggagaaagggtctg
agcgaggacgtcagcgtagcaaagttcttggagcccgagttttaccagagtctgatcgag
agcggcgctctggacttgtaa
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