Pseudomonas fragi: AV641_01645
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Entry
AV641_01645 CDS
T04285
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfz
Pseudomonas fragi
Pathway
pfz03030
DNA replication
pfz03410
Base excision repair
pfz03420
Nucleotide excision repair
pfz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV641_01645
03410 Base excision repair
AV641_01645
03420 Nucleotide excision repair
AV641_01645
03430 Mismatch repair
AV641_01645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfz03032
]
AV641_01645
03400 DNA repair and recombination proteins [BR:
pfz03400
]
AV641_01645
Enzymes [BR:
pfz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AV641_01645
DNA replication proteins [BR:
pfz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AV641_01645
DNA repair and recombination proteins [BR:
pfz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AV641_01645
NER (nucleotide excision repair)
GGR (global genome repair) factors
AV641_01645
MMR (mismatch excision repair)
DNA ligase
AV641_01645
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AV641_01645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AMB77862
LinkDB
All DBs
Position
complement(346524..348188)
Genome browser
AA seq
554 aa
AA seq
DB search
MLASLRFICGFWLALLALNALADTCPDRARYQALQQQLETWDDSYHRLGISQVSDAVYDQ
SRTRFEGWQHCFKFAVVDNPLKTAGGSVPHPVIHTGLLKLPDEKAVKQWIQGRQELWVQP
KVDGVAVTLVYRQGQLHQVISRGDGQTGQNWNRAARAISAIPQQLLQPVDIVLQGELYWR
LPGHIQARSGGVNARSTVAGLMARHQLSAEQGQGIGLFVWDWPEGPDTQDGRLARLSTLG
FADSQALSQPIESFEQARQWREHWYNNPLPFASDGLVLRQSRRPAAERWQAKPPNWAAAW
KYPHAQALGEVRKVTFKIGRTGRITPMLELIPVRLDDRTIKRISAGSFKRWQALDIRPGD
HVAISLAGMTIPRLDSVVFRTSKRVEVQAPDPDNFHGLSCWQLSPGCEGQFLARLSWLSG
KKGLAMQHVGPGTWNALLQAGRINNLTDWLTLDAAQLANIDGLGERSTARLLGSLHAARL
QPFERWLRAIGLPPTADAPLGQSWQALAARDTLAWQAQPGIGASRAVQLSSFFRDPNVQA
LSEELRAAGIAGFD
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcctcacttcgatttatctgcgggttctggctcgcgctactggcactcaacgca
ctggctgacacctgccccgaccgggctcgataccaggctctgcagcaacagctggaaacc
tgggacgacagctatcaccgcctgggtatttcacaggtcagcgacgcggtttacgaccag
tcccgcacgcgctttgaaggctggcagcactgtttcaaatttgctgttgtggataacccg
ctaaaaaccgcgggcggcagtgtgcctcaccccgtgatccataccggcctgctgaaactg
cccgacgagaaggccgtcaaacagtggatccaggggcgccaggagctctgggttcagccc
aaggtcgatggcgtagccgtcaccctggtatatcgacaagggcaactgcaccaggtgatc
agccggggagacgggcaaaccgggcaaaactggaaccgggcggcacgggccatcagcgcc
atcccccagcaattgctgcaacctgtggatatcgtgctgcaaggcgaactgtactggcgg
ctgcccggacatatccaggccagatccggcggcgtgaatgcccgcagcacggtcgccggc
cttatggcgcgtcatcaattgagtgccgagcaagggcaaggtatcggcctgtttgtctgg
gactggcctgaaggccccgacacccaggacgggcggctcgcccgattgagcaccctgggt
tttgccgacagccaggccttgagccagccgatagagagtttcgaacaggcccggcagtgg
cgcgaacactggtacaacaacccgctaccgttcgccagcgacggtctggtgctgcgccag
agccggcgccctgcggctgaacgctggcaggcaaaaccgccgaactgggctgccgcctgg
aaatacccgcacgctcaagccctgggcgaagttcgcaaggtgaccttcaagattggccgc
accggacgcataaccccgatgctggaattgatcccggtgcgcctcgacgaccgcaccatc
aaacgcatcagtgccggttccttcaagcgctggcaggccctggacatccgccccggggat
cacgtggccatcagcctggcaggcatgaccatcccgcgactggacagtgtcgtatttcgt
accagtaaaagggttgaagtgcaggcacccgatcccgataatttccacggcctcagttgc
tggcagctgtcaccaggctgcgagggccagtttttggcccgcttgagctggctgagcggt
aaaaaaggtctggccatgcaacatgtcggccccggaacctggaatgcattgcttcaggca
gggcgaatcaacaacctgaccgattggttgaccctggatgccgcgcagcttgctaacatt
gatggcttgggcgagcgtagcaccgcccgcttgctcggcagtttgcatgcagcccggtta
caaccgttcgaacgctggctgcgggccattggcctgccgccgactgcagacgcgccgttg
ggccagtcgtggcaagcgctggcggcacgtgacaccttggcctggcaggcacaaccaggc
attggagccagtcgcgcggtgcagttgagttctttttttcgcgatccgaacgtgcaggct
ttgagtgaagaattacgcgctgccggtattgccggtttcgactag
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