Pseudomonas fragi: AV641_08350
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Entry
AV641_08350 CDS
T04285
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfz
Pseudomonas fragi
Pathway
pfz03030
DNA replication
pfz03410
Base excision repair
pfz03420
Nucleotide excision repair
pfz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV641_08350
03410 Base excision repair
AV641_08350
03420 Nucleotide excision repair
AV641_08350
03430 Mismatch repair
AV641_08350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfz03032
]
AV641_08350
03400 DNA repair and recombination proteins [BR:
pfz03400
]
AV641_08350
Enzymes [BR:
pfz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AV641_08350
DNA replication proteins [BR:
pfz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AV641_08350
DNA repair and recombination proteins [BR:
pfz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AV641_08350
NER (nucleotide excision repair)
GGR (global genome repair) factors
AV641_08350
MMR (mismatch excision repair)
DNA ligase
AV641_08350
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AV641_08350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AMB79075
LinkDB
All DBs
Position
1799449..1801806
Genome browser
AA seq
785 aa
AA seq
DB search
MTAANTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALETEHPELITPDSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFDETDMREFDRRVSEGLDLPAGDLFGGGAEVEYSC
EPKLDGLAVSLLYRDGNLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPAVLEVRG
EVFMSKAGFDRLNETQLAAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSE
EFSDTHIGNLKQLQQWGMPISHELKLARGIGECLDYYRDIGERRASLPYEIDGVVFKVNS
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLERRPENARPVQIPESCPVCGS
HVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYTLTFEKIVDLEGFAELSSKNLLQAIADSKRPALARFIYALGIPDVG
EETAKVLARSLASLERVQRALPQVLTYLPDVGLEVAHEIHSFFGDAHNQQVIAQLLERGL
ELQDQGDLGAEFAASATLGGLIDKLHIPSVGPGGAQKLAEKFVTLEGVINADWLDMRQAL
PEKQAKAVREFFDNPENARAALAVEAQLRDFGMHWQSEKKTVEGLPLAGQTWVLTGSLEL
MSRDVAKDKLESLGAKVSGSVSGKTHCVVAGPGAGSKLVKANELGLKVLDEEAFVAFLGE
QGIQI
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaatacccgaattctagagctgcgcgctgaactggatcagcacaactat
cgctatcacgtactcgacgagcccagcattccggacgccgagtacgatcgtctgtttcgc
gagctcaaagcgctggagaccgagcatccggagctgatcactccggactcgccgacccag
cgagtcggcagcgcggcgttgtcggcttttactcaagtgcgccacgaagtgccgatgctg
agtcttggcaacgcctttgatgaaacagacatgcgtgaattcgaccggcgcgtcagcgaa
ggtctggatttgccggcgggcgatctgtttggcggcggcgccgaagttgaatacagctgt
gagcccaagctcgatggtctggcggtcagcttgctgtatcgggacggcaatctggtgcgc
ggagctactcgcggagacggcaccacgggcgaagacatcagtgtcaacgtgcgcacggta
cgcaatatcccgctcaagctgcatggcagcggttggcccgcagtcctggaggtgcggggc
gaggtcttcatgtccaaggccggctttgaccgtcttaacgagacccagctcgccgcaggc
ggcaaaacctttgccaacccgcgtaacgccgcagcaggcagtttgcggcagctggactcg
aaaattaccgccagtcgtcctttggagttttgctgctacggccttggccaggtgtctgag
gagttttcagacacccatatcggcaatctcaagcagttgcagcaatggggcatgccgatc
agtcatgaattgaaactggcccggggcattggcgaatgcctggactactaccgtgatatt
ggcgagcgccgcgcgtccctgccttatgaaatcgatggtgtggtgtttaaggtcaatagc
ctggcatcgcagcgtgagctgggctttcgtgcccgcgagccgcgctgggctattgctcac
aagttcccggcgatggaagagctgaccgagctgctggatgtggagtttcaggtcggtcgt
accggtgcggtcacgccggtggcgcgtttaaagccggtcaaggtggcgggggtcacggtc
tccaatgccacgctgcacaacatggatgaagtggcgcgtctggggctgatgattggtgac
acggtgattattcgccgtgccggtgatgtgattccgcaggtggtgcaagtggtgctggag
cggcgtcctgaaaacgctcgcccggtgcagatccctgagagctgtccggtgtgcggttcc
cacgtagagcgcacgcaactgatcaagcgcagcaagggtcgcgaaaccatcagtgaaggg
gcggtgtaccgctgtgtcgggcgactggcctgcggggcccagctcaaacaggcgatcatt
cactttgtttcgcgtcgggccatggatattgaaggcctgggcgaaaaaagcgtcgagcag
ttggtggatgaggggttggtgagttcgccggccgatctgtacaccctgaccttcgaaaaa
attgtcgatcttgaagggtttgccgagctgtcgagcaagaatttgctgcaggcaatagcg
gacagcaagcgtccggcattggcgcgttttatatacgctctgggaattcccgatgtagga
gaggagacggccaaagtactggcgcgctcattggcctctctggagcgtgtacagcgtgct
ttgccgcaagtactcacctacttgccggatgtcgggctggaagtggcccacgagattcac
agcttcttcggtgatgcccataaccagcaggtgatagcgcaattgcttgagcgtggactg
gaattgcaggaccagggggatctgggggccgagttcgcggccagtgccaccttgggcggg
ttgatcgacaagctgcatatcccctcggttgggccgggtggtgcgcaaaagctggccgaa
aagtttgtaacccttgagggggtaatcaacgctgactggctcgatatgcgtcaggcgctg
cctgagaaacaggccaaagcggtgcgcgaatttttcgacaacccagaaaatgcccgggcg
gctctggctgtcgaggcgcagttgcgcgacttcggcatgcactggcagagcgagaaaaag
accgtggaaggtttgccgctggccgggcagacctgggtgctgaccggctcgctggagttg
atgagtcgcgacgtcgccaaagacaaactcgaaagcctgggagccaaggtttcgggttcg
gtctccggcaagacccattgcgtggtggcgggccccggcgcgggctcgaaactggtcaag
gccaatgagctggggctcaaggtgctggatgaggaagcctttgtggcgttcctgggtgag
cagggcatccagatctag
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