Pluralibacter gergoviae: LG71_03620
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Entry
LG71_03620 CDS
T03300
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pge
Pluralibacter gergoviae
Pathway
pge03030
DNA replication
pge03410
Base excision repair
pge03420
Nucleotide excision repair
pge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG71_03620 (ligB)
03410 Base excision repair
LG71_03620 (ligB)
03420 Nucleotide excision repair
LG71_03620 (ligB)
03430 Mismatch repair
LG71_03620 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pge03032
]
LG71_03620 (ligB)
03400 DNA repair and recombination proteins [BR:
pge03400
]
LG71_03620 (ligB)
Enzymes [BR:
pge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LG71_03620 (ligB)
DNA replication proteins [BR:
pge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LG71_03620 (ligB)
DNA repair and recombination proteins [BR:
pge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LG71_03620 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG71_03620 (ligB)
MMR (mismatch excision repair)
DNA ligase
LG71_03620 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LG71_03620 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
Motif
Other DBs
NCBI-ProteinID:
AIQ99051
LinkDB
All DBs
Position
complement(748693..750372)
Genome browser
AA seq
559 aa
AA seq
DB search
MIWRSVGLLILILIGTPGQATCPAWSAGQAASEIARLEAQIARWNDRYWQAGISEVSDET
FDQLSEHLGQLQGCFGRSKPLPPIAARRGGARHPVAHVGLRKMADGDALARWMAAKQDLW
AQPKIDGVAVTLEYRNGALYRAISRGDGFAGEDWTDAVRRLPAVPAQISGPPGDSVLQGE
LFLLRDGHVQQAMGGINARAKVAGAMKRRAAASSPETIGIFIWGWPDGPAAMAARLTQLK
AAGFGYVSDYTLPVAHLGDVERLRQRWLTAPLPFVTDGVVVRAAREPAGRFWKPGDGEWA
VAWKYPPVTRVAEVRAIAFSVGRTGKVAAVAQLAPVTLDDKQVTRVSLGTVDRWRRLDIA
PGDRLVIGLAGQGIPRLERVAWRAAERTKPAPPAGDFHALSCYRDLPGCRAQFLSRLQWA
GKMLQIEGAGEAMWRQLLRTHRFDTLFGWLALDAGALEKTPGLSAKRVPTLLHQFNLARR
KPFRLWLQAAGIPLSADALRLLGDERWGQLLARSEAEWQRLPQVGSVKAGQLMRWLRAPE
VAALARWLAEQGVSGFGSQ
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgatatggcgcagcgttgggcttttgatactcatactgatcggcacgccgggacaggcg
acatgcccggcgtggtcggccgggcaggccgccagcgagatcgcccggcttgaggcgcag
atagcgcgctggaacgatcgctactggcaggcgggtatttccgaggtcagcgatgagacc
ttcgatcagctcagcgaacacctcggtcagctacagggctgcttcggccggtcgaaaccg
ctgccgccaattgccgcccggcgcggcggcgcgcgtcatccggttgcccacgtcgggctg
cgtaaaatggccgacggcgacgcgctcgcgcgctggatggctgcaaagcaggatctgtgg
gcgcagcccaaaattgacggcgtggcggtgacgctggagtaccgcaatggtgcgctgtac
cgggccatcagccgcggcgacggcttcgccggcgaggactggacggatgccgtcaggcgg
ctcccggcggtgccggcgcagatatccgggccgccgggcgacagcgtgctgcagggcgag
ctgttcctgctgcgcgacggacacgtgcagcaggcgatgggcggcatcaacgcccgggcg
aaggttgcgggcgccatgaagcgcagggccgctgcttcctctccggaaacgatcggcatc
tttatttggggctggcccgacggcccggccgcgatggcggcgagactcacgcagctgaag
gcggccggttttggttacgtcagcgactacacgctgccggtggcgcacctgggcgacgtc
gagcggctgcgccagcgctggctgaccgcgccgctgccgttcgtgaccgacggcgtggtg
gtgcgtgcggcccgagagcctgcgggcaggttctggaagcccggcgacggcgagtgggcg
gtggcgtggaaatatccgccggtgacaagggtggcggaagtcagggcgattgccttcagc
gtcgggcgcaccggcaaggtcgcggcggtggcgcagctggcgccggtgacccttgatgat
aagcaggtaacgcgcgttagcctcggcacggtcgaccgctggcggcggctggatatcgcg
ccgggcgatcggctggtgatcggccttgccgggcagggcattccgcgccttgagcgcgta
gcgtggcgggccgcagagcgaacgaaaccagcgccgcccgccggcgatttccacgcgctc
agctgctatcgcgacctgcccggctgtcgggcgcagttcctgtcgcgcctgcagtgggcc
ggaaaaatgctgcagattgagggcgcgggcgaggcgatgtggcggcagctgctgcggacg
caccgcttcgacacgctgttcggctggctggcgctggatgccggggcccttgaaaagacg
ccgggcctgtcggccaaacgcgtaccgacgctgctgcaccagtttaatctcgcccggcgc
aaaccttttcgcctgtggttacaggcggcaggcatcccgctgagcgccgatgcgctgcgt
ctgcttggcgatgaacgctggggtcagctgctggcccgcagcgaggcggagtggcagcgg
ctgccgcaggtagggagcgtaaaggccggccaactaatgaggtggctgcgcgcgccggag
gtggccgcccttgcccgctggctggcggagcagggcgtgagcggctttggcagtcagtga
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