Pseudochaenichthys georgianus (South Georgia icefish): 117445175
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Entry
117445175 CDS
T09629
Symbol
ptprfa
Name
(RefSeq) LOW QUALITY PROTEIN: protein tyrosine phosphatase receptor type Fa
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04514
Cell adhesion molecules
pgeo04520
Adherens junction
pgeo04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117445175 (ptprfa)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117445175 (ptprfa)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
117445175 (ptprfa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117445175 (ptprfa)
Enzymes [BR:
pgeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
117445175 (ptprfa)
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
117445175 (ptprfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
Tc-R-P
PTP-SAK
DSPc
V-set
Y_phosphatase3
PTPlike_phytase
PTP-NADK
C2-set_2
Ig_C17orf99
Fn3_PTPRU
PTP_tm
Fn3_ELFN
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
117445175
NCBI-ProteinID:
XP_071059046
LinkDB
All DBs
Position
4:complement(35499627..35846986)
Genome browser
AA seq
1921 aa
AA seq
DB search
MDLRFRRLLPLTRAALHLLLLATLVLPTHTESMPGFIKSPDDQTGISGGVASFVCQAVGE
PKPRITWFKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSVGEINTS
TKLTVLEEDQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIFWFKDFLPVDISS
TNGRIKQLRSGGTPIRGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRDQREVRR
VPPRFSIPPTNHEVMPGGSVNLTCVAVGAPMPFVKWVSGEVELTREEEMPIGRNVLELTN
IRQSANYTCVAISSLGMIETTAQIIVKALPRPPTSLIVTETTATSVTLTWDSGNPEPVSY
YVIQYRAKVSDNGFQEVDGVATTRYSIGGLSPFSEYEFRVMAVNNVGRGPPSGIVDTRTS
EQAPSSSPLHIQARMLSSSTMLVQWESPEEPNGQIRGYRVYYSSEHDAPLSAWQKHNTDD
SMLTTISGLTADITYSLRVLGFTSVGDGPPSEVLQIKTQQGVPSQPSGFEAEAELDSRIM
LSWLWPVQEPIVSFELLYWEESNPRDKRHATFGPAGSYAVEGLKADTLYMFSLAAKSVMG
LGVFTQPIEARTAQSTPSAPPQEVRLLSLSSTSIKVSWVAPPTDRHHGEIVRYSLSYQAL
TGEDLSLHQVSWIGADVTSYLLEDLLKWTEYLVWLKAHTDAGPGPESSAARIRTMEDVPG
APPRKVEADALNSTAIRVTWKPPLSVKQHGQIRGYQLVYSRLVNGEPHGQPLIMDISLPD
AQEAIVTGLLTETTYSVTVAAYTTKGDGARSKAKVVTTTGAVPGKPTMMISTTIGNTALI
QWQPPKEMVGEHVGYQLQYKRAEEEAFTIKDFKKADDHFTVTGLHKGATYIFKLCAKNRA
GNGEEYVKEISTPEDIPSSYPQNLSVVGLTATSTKLSWEPPPLAERNGKIVTYVVVYRDI
NILNNNTNSTTATEMTVQGLQPDTTYDIRVQAFNSKGGGPISPSIQSRTMSLSMPVFTKN
FGVKAVTKTSVLLTWEVPETFTSQVPLKILYNQQSVEVQGDLKRKLITQLQPDTDYSFVL
MSRGNSAGGLQQQVSIRTAPDLPQIKPALYQEDAEEGGRVTISLTTIGNTALIQWYYIVV
VPVNPTSHRRWENPEDMDIQELLEPGADSSLQRKKRQSQNLLQPYIAAKLDTLPELFTLG
DEKKYNGYYNKPLPGQQQYRCFVLADLTDNESRTFAASPFSEPFVVKLHSGMSRHAEEPE
MLWVMGPVLAVILIILIVIAILLFKRKRTCPAKDEHMAGVKDSLLAHSSDPVEMRRLNYQ
TQGSSALSCPKTPSXFSTLLEHPSIPISDLADYIERLKANDGLRFSQEYESIDPGQQFTW
EHSNLEVNKPKNRYANVIAYDHSRVILTPVDGVSGSDYINANYIDGYRKQNAYIATQGPL
PETLSDFWRMVWEQRTCTIIMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLDTVELAT
YSVRTFTLYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLSFLRRVKACNPPDAGPMVVH
CSAGVGRTGCFIVIEAMLERMKHEKSVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEA
ATCGNTEVPARNLYAHIQKLTQVSAGESVTAMELEFKKLANSKAHTSRFISANLPCXKFK
NRLVNIMPFESTRVCLQPIRGVEGSDYINNASFIDGYRQQKAYMATQGPLSETTEDFWRL
LWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTD
ARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRT
GVFITLSIILERMRYEGAVDLFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYA
T
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagattcaggcggctgttgcctctcaccagagcagctcttcatctcctgctg
ctggccacactggtgctgcctacacacactgagagcatgcccggcttcataaagtcccct
gatgaccagacggggatttcgggaggagtggcgtcgttcgtatgccaggccgtgggtgag
cccaaaccccgcatcacctggtttaagaaggggaagaaagtcagctctcagcgctttgag
gtgattgagtttgatgacggctcgggctccgtgctgcgtatccagcctctgaggacccac
cgcgatgaagccatctatgaatgcaccgccaccaacagcgtgggagagatcaacaccagc
accaagctcactgtcttagaagaagaccagatccctcatgggttccccaccatagacatg
ggcccccagctgaaggtggtagagagaacacgtactgctacgatgctgtgtgcagccagc
gggaaccctgaccccgagatcttctggttcaaagacttcctccccgtggacatcagcagc
accaacgggcgcatcaaacagctgcgttcaggtggtacaccaatcagaggagctctccag
attgagaacagcgaggagtcggatcagggaaagtacgagtgcgtggccgtcaacagcgcc
gggactcgctactctgctccagctaacctttacgtccgagatcaacgcgaagttcgccgt
gtacctccccgtttctccatcccccccaccaatcacgaggtgatgcccggcggcagcgtc
aatctcacctgcgttgcggtcggtgcccccatgcctttcgtcaagtgggtgagcggcgag
gtggagctgacccgggaggaggagatgccgattggccgaaacgtgctggagctcaccaac
atccgccagtctgcaaactacacctgtgtggccatctcctccctgggcatgatcgagacc
accgcccagatcattgtcaaagctctgcccaggccacccacctccctcattgtgacagaa
accacggccaccagtgtcaccctcacctgggactctggcaacccagaaccagtatcctac
tatgtgatccagtaccgtgccaaagtgtccgacaacggcttccaggaagtagacggggta
gccacgactcgatatagcattggcggcctcagcccattctcggaatatgagtttcgtgtc
atggccgtcaacaacgtcgggcgggggcctcccagtggaattgtagacacccgtacaagc
gagcaggccccttcatcctctcctcttcacatccaggcgcgcatgctgagctccagcacc
atgctggttcaatgggaatctccagaagagcccaacggacaaatccgaggctaccgggtt
tactacagctcggagcacgacgcccccctcagtgcctggcagaaacacaacacagacgac
agcatgctcaccaccatctcaggtctcaccgctgatatcacctacagcctgagggtgctg
ggcttcacctctgtgggagacgggcctccctctgaagttctgcagatcaagacccagcag
ggagttccctctcagccgtctggttttgaggctgaggccgagctggactctcgcatcatg
ctgtcctggctgtggccggtccaggagccaatcgtcagctttgaacttctgtactgggag
gagagcaaccctcgggacaagcgtcatgccacctttggcccagccggctcctacgcagtg
gaaggtctgaaggcagacacactctacatgttctccctggcagcaaagtctgtgatgggt
ttaggagtgtttactcagcccattgaggcccggaccgcccaatccaccccctcagcccca
ccccaggaggtacgcttgctcagcctcagctccaccagcatcaaggtgagttgggtggct
ccgcccacagacagacaccacggagagatagtgaggtactccctgagctaccaggctctg
acaggggaggacctgagcctccaccaggtgtcatggatcggtgctgatgtcaccagctac
ctgctggaggacctgctgaagtggactgagtatttggtgtggctgaaggctcacactgac
gctgggcccggcccggagagctccgctgcccgcatcagaaccatggaagatgtgcctgga
gctccccccaggaaggtggaggcagatgccctcaactcaaccgccatcagagtgacctgg
aagccccccctatctgtgaagcagcatggccagatcagaggctaccagctggtctactcc
aggctggtgaacggggagcctcacggacagccgctcatcatggacatctcacttcctgat
gcccaggaggccattgtaacaggtctgctcacagagacaacctactctgtgaccgtggct
gcttacaccaccaagggcgatggagcgcgcagcaaggccaaggtggtcactaccacggga
gcagtgcctggcaagcccactatgatgatcagcaccaccatagggaacactgcccttatc
cagtggcagcctccaaaggagatggtgggggagcatgtggggtaccagctgcaatacaag
agagcagaggaggaggctttcaccatcaaagacttcaaaaaggcagatgatcacttcaca
gtcaccggtctccacaagggagccacctacatcttcaaactgtgcgccaagaaccgggca
ggcaacggggaggagtatgtgaaggagatcagcacccccgaggacattcccagcagctac
ccccagaacctgagtgtggtgggcctgaccgccacctccaccaagctgtcctgggagccc
cctcctctggccgagaggaacgggaagattgtcacatatgtggtggtttatcgagatatc
aatatcctcaataacaacaccaacagtaccacggcaacagagatgaccgtccaagggttg
cagccagacaccacctacgatatcagagtccaagctttcaacagcaagggggggggaccc
atcagccccagcattcagagtcggaccatgtccttgtccatgccagtgttcacgaagaac
tttggcgtgaaggctgtgacgaagacctctgtccttctgacctgggaagtgccagaaacc
ttcacatctcaagtgcctctcaagatcctgtacaaccagcagagtgtggaggtccagggc
gacctgaagaggaagctgatcactcagctgcagccagacacagattactccttcgtgctc
atgagccgggggaacagtgctggggggctccagcagcaggtgtccatcagaaccgcccca
gacctgccgcagatcaaaccagcactataccaagaggatgcggaggagggggggagagtg
accatcagcctcaccaccatagggaacactgcccttatccagtggtactacatagttgtt
gtccctgtcaatccgacttctcataggagatgggaaaaccctgaagacatggacatacag
gagctcctggagcccggtgctgacagcagcctgcagaggaagaagagacagagccagaac
ctgcttcagccatacattgctgccaagctggacacgctgcctgagctcttcacactgggc
gatgagaagaaatacaacggctactacaacaaacccctcccgggccagcagcagtatcgc
tgcttcgttctggctgacctgacggacaacgagtctaggacctttgcagccagcccgttc
tcggagcccttcgtggtgaagctccacagcgggatgagccgacacgccgaggagccggag
atgctgtgggtgatggggccggtgctggcagtcatcctcatcatcctcatagtcattgcc
attctactcttcaagaggaaacgaacatgtccagccaaggatgagcacatggcaggcgtc
aaggactctctgctggcccactcctcagaccctgtggagatgaggagactcaactatcag
acacaaggttcaagtgccctcagttgcccgaaaactccaagttagttttcaaccctcttg
gaacatccttccattcctatctctgacctggcagactacatcgagagactcaaggccaat
gacggtctgcgcttctctcaggagtacgagtctattgatccaggacagcagttcacctgg
gagcactccaacctggaggtcaacaagccaaagaaccgctatgctaatgtgattgcctac
gaccactccagggtcatcctcacacctgtggatggagtgtcaggcagcgactacatcaac
gccaactacattgatggctacaggaagcagaatgcttacattgccacacaggggccactg
ccggagacactgagtgacttctggaggatggtgtgggagcagaggacctgcaccatcatt
atgatgacccgtctagaggagaagtctcgggtcaaatgtgaccagtactggcccagtcga
ggcacagagacatatgggatgatccaggtgaccatgctggacaccgtggagctggctacg
tacagtgtacgcacattcaccctctataagaacggctcgagtgagaagagagaggttcga
cagttccagttcatggcctggccggaccatggagtgcctgagtatcccacccccacactg
tcctttctacgcagagtcaaggcctgtaaccctccagatgctgggcccatggtggtccac
tgcagtgccggtgttggccgtactggctgcttcattgtgattgaagccatgctggagagg
atgaaacacgagaagtcggtggacatttacggtcatgtgacgtgtatgcggtctcagagg
aactacatggtgcagacggaggatcagtacatattcatccatgaagccctgctggaagct
gcaacatgtggcaacacagaagtccccgctagaaacctgtacgcacacatccagaagctc
acccaggtctctgcgggagagtctgtcaccgccatggagctggagtttaagaaactggcc
aactctaaagcacatacctcaagattcatcagtgccaacctgccatgcnacaaattcaag
aaccgcctagtgaacatcatgcctttcgagtccacccgtgtctgcctgcagccaatcaga
ggggtggagggctcagactacatcaacaacgccagcttcatcgacggatacaggcagcag
aaagcctacatggccacgcagggcccgctgtctgagaccacagaggacttctggagactg
ctgtgggaacacaactccaccatcgtcgtcatgctcaccaaactccgcgagatgggacgg
gaaaagtgccatcagtactggcctgctgagcgctcggcacgctaccagtactttgttgtg
gaccccatggctgagtacaacatgccgcagtacatcctgagagagttcaaagtcacagac
gccagggacggtcagtccaggactatcaggcagttccagttcactgactggccagagcaa
ggagtgccaaaaactggggagggctttatcgacttcatcggccaagtccataaaacaaaa
gagcaatttggacaagatggaccaattactgtgcactgcagtgctggtgttgggcggact
ggtgtgttcatcaccctgagcatcatcctggagaggatgaggtacgaaggagcggtcgac
ctcttccagaccgtcaagacgctccgaacacagaggccggccatggtgcagacagaggac
cagtaccaactgtgctaccgcgctgctctggagtacctgggaagctttgatcactatgca
acataa
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integrated database retrieval system
