Pseudochaenichthys georgianus (South Georgia icefish): 117446308
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Entry
117446308 CDS
T09629
Name
(RefSeq) msx2-interacting protein isoform X1
KO
K25100
Msx2-interacting protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117446308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446308
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
117446308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
117446308
NCBI-ProteinID:
XP_033938349
LinkDB
All DBs
Position
5:complement(19880151..19898563)
Genome browser
AA seq
3237 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLEDSSPSSSRDVTGFSRATVGPVFGPPVSL
HTREGRYERRIDGSSETRERAYDHSPYGHHERSGTFDRQRHYNADYYRDRSMFAAGPGSS
AIGGSFEAADPHFDSRIRDPFTLTNSSRRELYRDERGRRVDRTYHHRRSRSSHSSQSRHP
SPQRTTGQTPKTPHSPKRAPLSPGRGPRSRSHSRSSSSDSVSSTSSTGSGSDSNSSSSDG
SRARSVQSSATHAPTQSSMGLDSDEPRRSFGIKVQNLPVRSTDTSLKDGLFHEFKKHGKV
TSVQIHGASEDRYGLVFFRQQEDQEKALTVSKGKLFFGMLIEVIAWNGPETESENEFRPL
DGRIDEFHPKATRTLFIGNLEKTTSYQQLLDIFQRFGEIVDIDIKKVNGVPQYAFVQYSD
IASVCKAIKKMDGEYLGSNRLKLGFGKSMPTTCVWLDGLATSVTEQYLTRHFCRYGHVVK
VVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQMAFYRTMQTSGQD
IRDFYEIPTERREERRPPYHEFTAERAYFENIRTPGIYPEEARRDYAARSRERFPELEHF
QGEHFDPRFHEDPRDFRDFRDPFEQDIRKYTYIQRERERERERFEADRSRWSPSHPRRPI
TPTVSPSPSERAPRDSERRVYSQSSERSGSVSSMSPPHFDKSEKALLEHASKSDKSDKSS
QPELVASAEKTKRTKRKEKGDKAEKVKSRKTKGQSPSNLLPETELETGFDGASGRGRGSD
QDAHERNKCKGEAEPLPGNQLSTALDSVKSERSENSKVENSDLDGKNRLKKHLKPDIGND
GKDVSVDSDRLEARKRRFADSGGRTIRQKRSRHEEDDAIPSSDFGGAGALMKEIDTDKNK
DSQRRDSRLKSDKSSTQKDGQEDLRGQREKSESLDPRHPGHISSRRFSHEGITDQSSIRE
HEHHAAFTCVAQNADAEKSVKNKEDHVDIDLSQSYRKQMEQNRRLHQQQQQRESDKSDKP
GSPQEAEDLEHRSLVHEVGKPPEDVTDTFPSHKLKKIDLLETDSGIKRERVYRRIRQKSE
DRDWNNISPPGHQHFSHHADEQFSDPSQKELSRNEEKLHPDLELLVKRTHSTQVNKPNTP
LLSVEEEQQKRWESRVKQDLLPDLNFSRGLGKNIHNRKRLEYGMWHDLEPGEVRSDSEED
REAKPHSPVPSTSVPFSERPRVDRFSDPKLASLERNKFYSFALDQTITPDTKALLERAKS
LSSSREDNWSFLDYDSHFAGLRNRKDTEKVESAPRPTPSWYMKKKKIRSGSEDKLDERKE
EPKPEEQERRELFASRFLHSPVFELDTRRLQHLERKHEEPEHVNLQPGQQGDGELETGPV
VLFRSRFLELTRLQQQKNKPHPLPEAKEVSIITSEKVEKTPVQEQQAVPSPETTESIMEP
EIKPISPAEETIPEPRLTLTSVTQSVVKDLPPPEETFVALNPTPDPYTPVSVIKEEMKVE
IKEIVPMHHQLTEGLSDAEPAPVGAPEPIYSMDKCKASQSVEKCDNISDLKPLCIEKPSR
QDSNDELVSISEAELDPQTTQPEATSPIPHSLVEEEKETNAIWKTEAEPEGEEENPQVIK
LQMPIDETNDEPVSPQKEHKTKEMKNKKLKHSPAQVAPVPVVSNSGLEKPLTRKSERIDK
EKLKRGSSPRAESKSTGKSPIHGSESDMSEPGISAGRARRRNVKSVYATPVEDDGPVRPG
KEIPDSPRSARKRGSDKDATQQQNMEQDPPAPAPTKRGRPPKNRKQVDESSACKVEKSKL
DNKDTDSNESEGGERIPRVSKGKTSPHGTKDSWNPMSTVQGSGLPRKVKKSDATEDDQEM
DFTDEDSLALQDSSSSFKEDPPIQVEKKEEKDKQGRELGRDKDDFLDEASEGKSNGKESD
SPVLEEKSASEKIVRGKTKLMRTPKSPVLKNLKIRLNVTEVKDLLQLGDDELGSQEDSSK
KLRPGDHSDPVSKCTSADQEGPNDEEKDISAEERQELLESPKHVISQELELEQAVENIAK
LTDPTFPTEPPTTPIPPTEVKSEPEEQKPYPASETELMAAIDSITAEDGSVISSQAPPPS
ADVVSEPEIQNVMPSAKDDEPATTNTPAIKEEPVFPTTPKKGPKGRPKTPKRYKGQKQVR
RDFKEGPSISEELTTPLAESPPSSVKTVLTSTPSAATTTVITPTTWKPEPEPEPEPLAVK
ATDVNKDIEAPSEEQIQHLKSVNPQSKSPILPKPQQVPAECTTPSLSPLANRPHIRPIQT
NRIPVSPPDWRHQSKDTVSVSPFMPLSSKENQSLPSDSDNMITDHGTSDLRQILMKHKNL
SLPGSSSIPCNLPTLRDQNPSESNTPSAVVPNKSPLPSSLMVAHPAPPIVRPPALLPSPE
SKSVISVIASTATSVISRVCNPPESDDKVNINIGNPCVDMTLPKPTYRPNKDDSGSYHGP
VADEVGSATRFIVESPTLGAGSCPGLRVNTSEGVVVLSHSGQKIEGPQRISAKISQIPQA
TAGDMESQQLVSMPQIKQEMYGHSHLGLQKGPSSQTDHGHPGKMQSTSIKQESTGLEKME
SSYQPGPQGVVKRLPQGNQQVMSYHQEYMPIKHQKKMDSADPHSTDGAKPSWTSAISPAI
SPHLPSPPGNHVGFVPATGERAPSHISGVKQEPRSPRKSGHPHSPFTKVSSPIGSSSPKG
IPGMLSTGLPAMQQFISGVHHQEQSVIMQPHSVQGGLGRMSPHRVAQSIPVGHLVQGDVR
VNTPPLSVMSYGMHSEPLASPWSGSMQPRPTSPQTVGRDKVLKVNPASLRGHEGEQEEAR
RFHQAQARQSAAQLKPETMQSDPRGRSVQLETYMAQRDMRVLLHQQGERLATDPHSGHIQ
EILPPSSAPSNLSLSLSPRAHVLSKGVSEKDITKQLEAKRPHSPLPKDGLMGIRQSGQAM
ASPQRAQLMPPGPSGSFPEYSGMYSNRGGTHSQIPETSPVGLNQPPLNVTPTMGADLQTK
PDGKMTQPVNMLQLLTKYPIVWQGLLALKNDTAAVQLHFVCGNKALAHRSLPLQEGGALL
RIVQRMRLEASQLESVARRMTGDSDFCLLLALPCGRDQDDVLNQTQALKAAFINYLQAKL
AAGIINIPNPGSNQPAYVLQIFPPCEFSESHLSQLAPDLLNRISSISPHLMIVITSV
NT seq
9714 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctttgggtgggaaatttacccgaacatgttcgagaggag
aagatcgtggagcattttaaacggtatggccgtgtggaaagtgttaaagttctgcggaag
cgagggtcagagggcggtgttgcagcctttgtggattttgtggatattaaaagtgcgcag
aaagctcacaatgctgtcaacaagatgggagaccgggaccttcgaactgactacaatgaa
ccggggtcagtccctagtgctgttcgaggccttgaagacagctccccctcaagcagtcga
gacgttacaggattctctagggcaacagttggtccagtgtttggcccacctgtgtccctg
cacaccagagaaggacgttatgaacggagaatagatggtagctcagaaacccgcgaacgt
gcatatgatcacagcccatatggacaccatgagcgcagtggcactttcgacagacagcgc
cactacaacgctgattattacagagatcgttccatgtttgctgctggccctggaagtagt
gccattgggggaagctttgaggcagcagacccacattttgactctagaattcgagaccca
tttactcttactaattcttcacggcgtgaactatacagagatgagagaggacggcgggtt
gatagaacctaccatcaccggaggagccgatcatctcattcctcacagtcgaggcaccct
tctccacaacggaccacgggacaaacccctaaaactcctcattcccctaaaagagctcct
ttgtcccctgggagaggtccgcgatctcgatcccacagcaggtcgtcgagctctgattct
gtcagcagcaccagcagcactggcagcggcagtgactcaaacagcagctcaagtgatgga
tcacgggcacgctctgttcagtcgtcagctactcacgcccctactcagtcttctatgggg
ctcgactcggatgagccacgcagaagctttgggattaaagtgcaaaacctaccagtacgc
tccacagacacaagtttaaaagatggacttttccatgaattcaagaaacatgggaaagtg
acatcagtgcagatacatggagcgtcagaagaccgctatggtttggtgttttttcgacag
caagaggatcaagagaaagccctcactgtttccaaaggaaagctgttctttggcatgctt
attgaagtcatagcctggaatggtcctgaaacagagagtgaaaacgagttcaggcccttg
gatggtcggatagatgagtttcacccaaaggccacaaggacactgtttatcggcaacctt
gagaagactactagttatcaacaactccttgacatttttcaacgctttggagaaattgtg
gacattgacatcaagaaagtaaatggtgttccccagtatgcctttgtgcaatactctgat
attgccagtgtctgcaaggccattaagaagatggatggagagtatctggggagcaacaga
ctaaagcttgggtttgggaagagtatgcctacaacgtgtgtctggctagatggtttggca
accagcgttacagagcagtacctcacacggcatttctgccgctatggacatgttgtaaag
gttgtgtttgatagattaaaagggatggccctcatcttgtacaacaacacagatttcgct
caggcagctgtaagggagaccaaaggctggaagattgggggcaataaaataaaggtggat
tttgcaagtcaagagagtcagatggccttctaccgaactatgcagacatctggtcaagac
attagagacttctacgaaattcctactgaacgacgagaggaacggagacctccataccat
gaatttacagcagaaagggcttactttgagaatatacggacacctggcatctatcctgaa
gaagctcgaagagactacgctgctcgcagcagggaacgttttcctgaactggaacacttt
cagggggaacactttgacccacgttttcatgaagacccaagagacttccgggacttcaga
gacccctttgagcaagacattcgaaaatacacatatattcaaagagagcgagaaagagag
cgagagcggtttgaggctgatcgtagcaggtggagcccttcccatccaaggcgacctatt
actcctacagtatcaccatcaccctctgagcgagctcccagagactcagaaagacgcgtt
tacagtcaatcttcagagagaagtggtagtgtgagctcaatgtcaccaccacactttgat
aaatctgaaaaggccctgcttgaacatgcctccaagagtgacaagagtgacaaaagcagc
caaccagagcttgtggcaagtgcagagaaaactaaacgtacaaaacgaaaagagaaagga
gacaaagctgagaaagttaaatccaggaaaacaaaggggcaatccccatccaacctacta
ccggaaacagagcttgagactggttttgatggagcgtctggaagaggaaggggatcagac
caggatgctcatgagaggaataaatgcaagggggaagctgaacccttacctggcaatcag
ttgtcaactgctcttgactctgtaaaaagtgaaagatctgaaaatagtaaagttgagaac
tcagacttggatggaaaaaatcgactcaagaaacatctaaagcctgatattggaaatgat
gggaaagatgtatccgttgactcggatcgccttgaggcaagaaaaaggcgctttgctgat
tcaggtggcaggaccattcgtcagaaaagaagcaggcatgaagaggacgacgccattcca
tcttcagattttggtggtgctggtgctcttatgaaagagattgacactgacaaaaacaaa
gattcacaacggagagattcaagactcaaaagtgataaaagtagcactcagaaagatggt
caagaggaccttagaggacaaagggagaagtctgagtctctggacccacgacatccaggg
cacatttcatctagaaggttttcacacgaggggattacagatcaaagcagtataagagaa
cacgaacaccatgctgctttcacatgtgttgctcagaatgctgacgctgagaaaagtgtt
aagaacaaggaagaccatgttgacattgacctctctcagagttatcgcaagcaaatggag
caaaacaggcgactgcaccagcagcaacagcagcgtgaatctgacaagtctgacaaacca
ggaagtcctcaagaagcagaggacttggaacatcgcagtcttgtgcatgaagttggcaaa
ccacctgaggatgtaacggatacttttccatctcacaaattaaagaaaatagacctttta
gagactgactccggaattaagagggagcgtgtctacaggagaattagacaaaaaagtgaa
gatcgtgactggaacaacatctctcctccaggacatcagcacttctctcaccatgcagat
gaacagttttcggacccttctcagaaagagttgagtagaaatgaggaaaaacttcaccca
gatctggagctgttggtcaaaaggacacatagcacacaggtaaacaagccaaacactcct
ttacttagtgtggaagaagagcaacagaagagatgggagagcagagttaaacaagacttg
ttacctgacctaaacttttctagaggtcttggtaagaatattcacaatcgcaagcgtttg
gaatatggtatgtggcatgaccttgagcctggggaagttcgatctgactctgaagaggac
agagaagccaaaccccactctccagtgccctccacatcagtgcctttttctgaaaggcca
agggttgatcgattttcagaccccaagctagcaagtcttgaaaggaacaaattctactcc
tttgcacttgatcaaaccatcacaccagatacaaaggctctgctcgaacgtgcaaaatct
ctctcctcttcaagagaagataactggtcctttttggattatgattctcactttgcaggt
ttacgcaacagaaaggatactgagaaggtggaatcagcaccacgtcctacaccctcctgg
tacatgaaaaagaaaaagattcgcagtggatctgaagacaaacttgatgagcgcaaggag
gagcccaagccggaagaacaggaacgtagggagctttttgcctcccgctttcttcacagc
cccgtgtttgagctggacactcggcgacttcaacacttggaacgcaaacatgaagaacct
gagcatgtaaacctgcaacctggacagcaaggtgatggtgaacttgaaactgggccagtt
gtccttttccgtagtcgttttttggaacttacacgacttcaacaacagaagaataaaccc
catccgttaccagaggcaaaagaagtctcaataatcactagtgagaaagtggaaaaaaca
cctgttcaagagcaacaagcagtgccgtctcctgaaacaacagaatccatcatggagcca
gaaatcaaaccaatcagtcctgctgaagagaccattcctgaaccccgactcacacttact
tctgtcacccaatctgtggtcaaggaccttcctccaccggaagagacatttgttgcatta
aatccaacccccgatccatatacccccgtgtctgtcataaaggaagagatgaaagtagag
atcaaagagattgtacctatgcaccatcaattaactgagggcttatctgatgctgaacct
gcaccagttggagcacctgaacccatttactcaatggataaatgtaaagcttctcaatct
gtagagaaatgtgataatatcagtgatttaaaacctctctgtatagaaaaaccaagccgt
caggattctaatgatgagcttgttagcatttcagaagcagagctagatcctcagacaaca
caaccagaagcaactagtcccattccacatagtcttgtagaggaagagaaggagaccaat
gctatttggaaaacagaagcagagcctgagggagaggaggaaaatcctcaagttattaaa
ctgcagatgcccattgatgagacaaacgacgagcccgtttcacctcagaaggagcataaa
acaaaagaaatgaaaaataaaaagctcaaacactcccctgctcaagtggctccagttcct
gtggtatctaactctggtctggagaaaccattaacacgcaagagtgagcgcattgacaaa
gagaagctaaaacgaggatcatccccaagggctgaatcaaagtcaacaggcaagtctccg
attcacggatcagaatccgatatgtccgagcctggcatatcagcaggcagagcaagacga
agaaatgttaaatctgtgtatgccactccagttgaagatgatgggccagttcgtcctgga
aaggaaattccagactcgccacgctctgccagaaagcgaggttcagacaaagatgcaaca
caacaacaaaatatggaacaggatccacctgctccagcccctacgaaacggggccgtccg
cccaagaatcgcaagcaagtggacgagagttcagcatgtaaagtagaaaaatctaaattg
gacaataaagacacggattcaaatgaatcagaaggtggggaacgaataccaagagtgtca
aaaggtaaaacctctcctcatggcaccaaggattcatggaatccaatgtcgacagttcaa
ggatctggattaccacggaaagtgaagaaaagtgacgcgactgaagatgatcaggaaatg
gatttcacagatgaagattccttggctttgcaagattcatcaagttcatttaaagaagat
ccacccattcaagttgaaaagaaagaggagaaagacaaacaagggagagaattaggcaga
gataaagatgattttcttgatgaggcttctgaaggtaaatcaaatgggaaagagtcagat
tcccccgttttagaagagaaatctgcttcagagaagattgttagaggaaaaaccaagttg
atgagaactcccaagtctcctgttctcaagaacctcaaaatcagactaaatgtcacggag
gtcaaggatcttcttcagttaggggatgatgaacttgggagtcaagaggattcttcaaaa
aagctcagaccaggtgaccacagtgatcctgtttcaaaatgtactagtgccgaccaagag
ggccctaacgatgaggaaaaggacatttccgctgaggaaagacaagagctccttgaatca
ccaaaacatgtcatttcacaggagctggaattggagcaagctgttgagaacattgctaaa
cttacagatccaacttttccaacagaaccaccaacaacacctattccaccgacagaagtc
aaaagtgagccagaggaacaaaaaccttatcctgctagtgagacagaacttatggctgct
attgattcgataactgcagaggatggaagtgttatctcatcccaagcgcctcctcctagt
gctgatgtcgtttcagaacctgagatacaaaacgtgatgccctctgccaaggacgatgaa
cctgcaacaacaaatacacctgccattaaggaggagcctgtctttcctacaacaccgaaa
aagggtcccaagggaagacctaaaacacctaaacgttataaaggacaaaagcaagtaaga
agagattttaaggaaggcccttcaataagtgaggagttgacaactcctttagcagaaagc
ccaccatccagtgtaaagactgttcttacatcaactccatcagcagcaaccacaacggtt
atcactcctactacttggaagccagaacctgagccagagccagagcctttggcagtcaaa
gccacagatgtaaacaaagatatagaggcaccttctgaagaacagattcaacatctcaaa
tctgttaacccccaatcgaagagtccaatacttccaaagccccaacaggtgccagccgag
tgcaccaccccttccctgtctccactagctaacaggccacatatacgacccattcaaaca
aatagaattcctgtttctccaccagattggcgccaccagtctaaagatacagtctccgtc
tcacccttcatgccgttatcatcgaaggaaaaccagtctttaccctcagactctgacaac
atgattactgatcatggcacaagtgatttgagacagattcttatgaaacacaaaaatctt
tcattgccaggcagtagttctattccttgtaatctacccaccctgcgagaccagaatcct
tctgagagtaatactccatcggctgttgtgccaaataagtcaccactacctagcagttta
atggtagctcatcccgcgccccctatagttcgacctccagccttactaccatctcctgag
tcgaagtctgtgatctctgttattgcatccactgcaacctctgttatcagtcgcgtctgc
aaccctcctgagtccgatgacaaagttaacataaacattggaaatccctgtgtggatatg
actttacccaagccaacttataggcctaacaaggacgattctggatcataccacgggcct
gtggcggatgaggtgggaagtgccacacgattcattgtcgagagccccactcttggtgca
ggatcttgcccaggtctaagagttaatacatctgaaggagtggtagttttgagccactcg
ggccaaaaaatagagggaccacagaggataagtgcaaaaataagtcagatcccacaagca
acagcaggtgacatggaatctcagcagttggtatccatgccccagataaaacaagaaatg
tatggtcattctcatctaggacttcaaaaggggccttcatcgcagacagatcatgggcat
cctggtaaaatgcagtcgacttctattaaacaagaaagcacgggtttggaaaagatggaa
tcttcttaccaacctggacctcaaggagtagtgaagcgtctcccacaaggtaaccaacaa
gtaatgagttaccatcaagaatacatgccaataaaacatcagaagaaaatggacagtgct
gatcctcacagtacggatggagccaaaccatcttggacctctgctataagtcctgcaata
agccctcatttgccctctccgcctggtaaccatgtaggctttgttcctgcaactggtgaa
agagctccctctcatatcagtggagtcaaacaagaaccacgatcccctcgaaagtcaggt
catccccactctccgtttactaaagtgtcctcacccattggctcctcctcacccaagggc
ataccagggatgttatccactggccttcctgccatgcaacagtttatctcgggtgtacat
catcaagagcagtcggttatcatgcaacctcacagtgtgcaaggaggcttgggacggatg
tctcctcaccgtgttgcccagtcaattccagtggggcatcttgtccaaggagatgttcgg
gttaatactccacctctctctgtgatgagctatgggatgcatagtgagccgcttgcctct
ccttggtctggatccatgcagccacggccaacgtcaccacagactgttggcagagacaag
gttctcaaggtaaatccagcttcgttgaggggtcatgagggggaacaagaagaagccagg
cgcttccaccaggctcaagcaagacagtctgctgcacaattaaaaccagagactatgcag
tcagatcctcgtgggcgtagtgtccagttagaaacatacatggcacaacgagatatgcga
gtgctcttgcaccaacagggagagcgtttggccacagatcctcattctggacacattcaa
gagattcttcccccctcctcggcgccctccaatctgtccttatccttgtctccaagagca
catgttttgtctaaaggtgtgtctgagaaggatataacaaagcaattagaggcaaagagg
ccacactctcctcttcctaaagatggattgatggggatcagacaatctgggcaagcaatg
gcatctccccagagagctcagctaatgccaccaggacctagtggctcattccccgagtac
tcagggatgtactcaaaccgaggaggcacccactctcaaataccagagacgtcacctgtt
ggacttaaccagccacctctgaatgtcacaccaaccatgggtgcagacctccagacgaaa
ccagatggcaagatgacgcagcctgttaatatgttgcagttgctcacgaaataccctatt
gtttggcaaggcctgctggcactgaaaaacgacacagctgcagtccagttgcattttgtc
tgtggcaacaaagctttggctcatcgatcactgcccctacaagaaggaggcgcattgctt
aggattgtccagagaatgagactcgaggcttcacaattggagagtgtagcccgaagaatg
acgggggacagcgacttctgtctgctccttgcactgccatgcgggcgagaccaagacgac
gtcctgaaccaaactcaagctcttaaggctgcgttcatcaactacctgcaggcaaagttg
gctgctggtatcatcaatatccccaacccaggctccaatcagcctgcctatgtgctgcag
attttcccaccatgtgaattctccgagagccacctgtcgcagctcgcccccgaccttctc
aacaggatctccagcatctcaccacacctcatgattgtcatcacctctgtgtaa
DBGET
integrated database retrieval system
