Pseudochaenichthys georgianus (South Georgia icefish): 117450117
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Entry
117450117 CDS
T09629
Symbol
agrn
Name
(RefSeq) agrin
KO
K06254
agrin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04512
ECM-receptor interaction
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117450117 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117450117 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pgeo00535
]
117450117 (agrn)
Proteoglycans [BR:
pgeo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117450117 (agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
Kazal_CFAI
EGF_laminin
SEA
EGF
Laminin_G_3
hEGF
FG-GAP_3
Motif
Other DBs
NCBI-GeneID:
117450117
NCBI-ProteinID:
XP_071059939
LinkDB
All DBs
Position
7:31687009..31982812
Genome browser
AA seq
2085 aa
AA seq
DB search
MGSHRTLAGGRTVLLVAGLLVALGHRCAASCPERELEDREEEANIVLTGTVDEIINMDPV
HNTYSCKVRVWRYLKGKTNINREILLDGGNKLMIGGFGNPGICDNQVATGDTRIFFLNPA
KEDMGPEHKNELMLNSSLMRITLRNLEDVEHCVEDKPPHFTPAQPPDGCRGMLCGFGAVC
ERDQTDPSKADCVCKKADCPSLVAPVCGSDSSTYSNECELEKAQCNAQRRIKVLRKGPCS
LTDPCSEVTCSYGSTCAESSDGVSAKCMCPLGCEGKREQTVCGSDGKDYRNECELHQHAC
KDQKNIRVQYQGNCDPCKDNENSLTTQCRVESITRQSIFSPLPESCPPGGEPLCASDGHT
YPSECAMEATGRRKGIKVKKIHNGKCRREDDCQEECLFNSVCLVEQPKARCSCDPIECDG
TYKPVCGKDGQTYTNDCMRRTTECLSKTLISIKHLGPCDLSIPSPCLVKVCDHGAVCVVE
NDVPVCECPEACPQTSDPVCGSDGHSYGSPCEMRAMGCALQKAIHIQHKGPCDDSCANCS
FGAICDAQSGQCVCASECVKSHQPVCGSDGNTYNSECELHVRACKQQMDLRVVSQGECKT
CGSTVCAWGARCVHNMCECPQCSGEAFSPVCGSDGTTYNNECELRTASCEQQRKIDAAKP
GSCDEDCGSGESGSGAESCEQDRCRMFGGSWDEDAEDDRCMCDFTCQSVPHNTVCGSDGK
NYSNECQLKKARCEKQEHLLIQNQGACAAISATSLPELSEPQHCSESVYGCCHDNMTAAL
GVGLAGCPSTCQCNVYGSYKGTCDPTSEQCSCKPGVGGQKCDRCKPGFWNFRGIVTENIS
GCTPCNCDAAGSVRDDCEQMSGLCSCKTGVKGMKCNLCQDGSTNGCDKGPEPPTSCEELV
CSYGATCIEVNDQAHCECPSPDCDEKSKTKVCGSDGVTYADQCQLRTIACRQDKDITVQH
SGQCTETISEPADRPTPNPLATTPSSSSVATITTPTSFHPNMVWAIPLPRTEEPSTTEWP
PATTISSTLINNRAKQHHISHTQPPQSTTTSTPRSRPAPPAAAISFDGSGSGEPSGDDQT
EEEEEQEQEDEAGSGVPTEASGAEEPVGPTLASTTVPTAEDRSSCDNTEFGCCPDGKTPS
TTPEGANCPSTMRFSGFLHLDQVEGQEIFYTPEMEDPKSELFGETARSIESALNELFRKS
EVHKDFMSVRVRNLAPSNSILAFVEAHFKPDTRFTVEDIEGALLKQLKASKDTSIAVKKP
EDENIRFTNYGISSVPFFTTTTTTTTTASVTTAAPTTTTMPPPTSPYITRRPPGTIRRPY
GRRTTTTSAPVTTPRPTTTTTEAPTTTAPPPATTVAHVRGRLHHKKPCSSHPCLHGGTCE
NEGNDFSCKCPAGRGGSVCEKVIKYFIPSFGGQSYLAFQTMSAYHTVRIAMEFRVSEMTG
ILLYNGQDGKKDFISLALVNGKVELRFNTGSGTGTVISKVQINQGRWHQLVVTRNRRNAM
LSVDNEPHIEGESPRGTDGLNLDTDLFIGGVLEEMKQDVRERTAVATGVVGCIRLLDVNN
RVLNLQESGGDSLYGSGVGECGNNPCQPNPCKNGAACQVKEAEMFHCKCSKGFWGPTCAD
VHDPCEPNRCHPSSQCQALPEGGYKCECPMGREGRHCEKMAEKRGAYMPLFDGDSYVELK
GLHLYGHDLRQKVSMTVILKANSSNGLIFYNGQKSDGKGDFISLSLNEGILEFRYDLGKG
PATIRSMEPIQLNVWNTINLERSNRKGEIMVNKKDPVRGEAPNLHVDLNLKESLFVGGAP
DYSRLARVAALTEGFKGTIQKIILMGTPILREENALRASNVDMFQEHACSQEPCQNGGRC
NPMLDAYECVCLSGFSGGRCQNTIYEKSAGETEAIAFDGRTFIEYHNAVTKSPESLENPS
DQSEKALLVNKFELSIRTEATQGLVLWSGKGVERSDYIALAIVDGHIQMTYDLGSKPVVL
RSSVRVDTNLWIRIKASRALRDGSLQVGNEAAVTGSSPLAATQLDTDGALWLGGLEELAV
ARRLPKAYSTGYMGCIKDVVVDGVELHLVEDALNSPKILHCSAAK
NT seq
6258 nt
NT seq
+upstream
nt +downstream
nt
atgggttcccatcggacactcgcgggcggccggacagtgctgcttgtggcggggctgctc
gtggctctggggcaccgctgcgccgcaagctgcccagagagagaattggaggacagggaa
gaggaggccaacatagttttgaccggcaccgtggacgaaataataaacatggacccggtg
cacaatacctattcttgcaaggtcagggtgtggcgctacttgaaagggaagaccaacatc
aaccgtgaaatcctcctggacggcggcaacaagttgatgataggcggctttggcaacccc
gggatctgcgacaaccaggtagccacgggtgacactcgcatattctttctcaaccctgcc
aaggaagacatgggaccagaacacaagaacgaacttatgctcaactcaagtctgatgagg
attaccctgcgcaacctggaggatgtggaacactgcgtggaagacaaacctcctcacttc
acaccagcccagcctcctgatggctgcagagggatgttgtgtggcttcggcgccgtatgt
gagcgggaccagactgacccatccaaagctgactgcgtttgcaagaaagcggactgtcca
tcgttggtggcacctgtctgcggctctgattcgtccacctactccaatgagtgcgaactg
gagaaagcccagtgcaacgcccagagacgcatcaaggttctgcgcaagggtccctgctct
ctgacggacccctgctccgaggtgacctgcagctacggcagcacctgtgccgagtcctcg
gacggcgtgtcagctaaatgcatgtgtcccctcggctgcgagggcaagcgcgaacagacc
gtgtgcggcagcgacgggaaggactaccgcaacgagtgtgagctccatcagcatgcctgc
aaggaccagaagaacatccgggtgcagtaccaagggaactgcgacccatgtaaggacaat
gagaacagtctgaccacgcagtgccgggtggagagcatcacccgccagtccatcttctct
cccctgccggaatcatgccccccggggggcgagccgttgtgtgccagtgatggacataca
taccccagcgagtgcgccatggaagcaaccggcaggcggaaaggcatcaaggtcaagaag
atccacaatgggaaatgcagaagggaggatgactgtcaggaggagtgtctcttcaactcc
gtgtgtctggtggagcagccgaaagcccgctgctcctgcgaccccatcgagtgcgacgga
acctacaagcccgtgtgcggcaaggacggccagacctacaccaacgactgcatgcggcgc
acgaccgagtgtctgagcaagaccctcatctccatcaagcacctggggccctgtgatctc
agcataccgagcccctgccttgttaaggtgtgtgatcacggggcggtgtgcgtggtggaa
aacgacgtgccggtgtgcgaatgccccgaggcctgcccgcaaacatcggaccctgtgtgc
ggatccgacggccacagctacgggagcccctgtgaaatgagagcgatgggttgcgccctg
cagaaggccattcacatccagcacaaaggaccctgtgatgactcgtgtgccaactgctct
ttcggggcaatctgcgatgcccagagcgggcagtgtgtgtgtgcgtcggagtgtgtgaag
tcccaccagcctgtgtgtggcagcgacggaaacacctacaacagcgagtgtgagctgcac
gtgcgcgcctgcaaacaacagatggacctccgagtggtcagccagggcgagtgcaaaacc
tgcggcagcaccgtgtgtgcctggggggcccgctgcgtccataatatgtgcgagtgcccg
cagtgctcgggcgaggccttctccccggtgtgcggcagcgacggcaccacctacaacaac
gagtgtgagctccgcacagcctcctgcgagcagcagaggaagatcgatgcagccaagcct
ggcagctgcgacgaagactgcggctcaggagagtcaggatcaggcgcggagagctgtgaa
caggaccgctgtcgcatgttcggaggctcgtgggacgaggatgccgaagacgatcgctgt
atgtgtgacttcacctgtcagagtgtgcctcacaacacggtttgtggctcggatggcaaa
aactacagcaacgagtgccagctgaagaaggccagatgtgagaaacaggagcacttgttg
attcagaatcagggagcctgtgcagcgatttcagccacatctctaccggagctgtcggag
ccccagcactgcagcgagtctgtgtacggctgctgccacgacaacatgactgctgctctc
ggagtcggactggctggatgtcctagtacgtgtcagtgtaacgtctacggctcctacaag
gggacgtgtgatcccaccagcgaacagtgctcttgtaagccaggcgtgggcggacagaag
tgtgaccgctgcaagccgggcttctggaacttccgcggcatcgtgacggagaacatcagc
ggatgcacgccgtgtaactgcgacgccgcaggctcggttcgggacgactgtgagcagatg
tcgggcctctgttcctgcaagacgggagtgaagggcatgaagtgcaacctgtgtcaagac
ggaagcaccaacggctgcgacaaaggtccagagccccccacctcatgtgaggagttagtg
tgcagttacggagctacatgcatcgaggtgaacgaccaggcccactgcgagtgtccttcc
ccagactgcgacgagaaaagcaaaacaaaggtgtgcggctcagacggggtgacctacgcc
gaccagtgccagctgaggaccatcgcctgcaggcaggacaaggacatcacagtgcagcac
tccggacagtgcacagaaaccatctctgagccggcagaccgacccacccccaaccccctc
gccaccacccccagctcaagctctgttgccaccatcaccacccccacctccttccaccct
aacatggtgtgggccatcccgcttccgaggacggaagagccatcgaccactgagtggccc
cctgccaccaccatctcttccaccctcatcaacaacagagcaaaacaacaccacatcagc
cacacccagccgccgcagtccaccaccacctccaccccccgcagcagaccggcccccccc
gccgccgccatctccttcgacggctcaggcagtggggagcccagcggcgatgaccagacg
gaagaggaagaggaacaggaacaggaagatgaagcgggtagcggcgttccaacggaggcc
agtggcgcagaggagcctgtcggtcccacgttggcgagcaccactgtacccacagctgag
gaccggtcctcctgcgacaacacagagtttggatgctgccccgacggaaagacaccctcc
actactccagagggcgccaactgcccctccaccatgaggttcagcggcttcctgcacttg
gaccaggtggagggccaggagatattctacacccctgagatggaggaccccaagtcggag
ctgtttggagagacagcccgcagcatagagagcgcactcaatgagttgttcaggaagtcg
gaggtgcacaaagacttcatgagtgttcgtgtcaggaatttggctccaagcaactccatc
ttggcctttgtggaggcccacttcaaaccagataccagattcacggtggaagacattgaa
ggagccctgctcaaacagctgaaggcctccaaagacaccagcatcgctgtgaagaagcca
gaggacgagaatatccgcttcaccaattatggcatctcctccgtccccttcttcaccacc
accacgaccaccaccaccacggcctcagtcaccacagccgctcccaccaccaccaccatg
cctccccccacctccccgtacatcacccgccgccccccaggcaccatacgcaggccctat
ggcagacgcaccaccacaacctcagcgcctgtaaccacaccgcgacccaccaccaccacc
acagaggcccccactaccactgctccacctccagccaccactgtagcccatgtccgaggc
aggctgcaccacaagaagccctgcagctcccacccctgcctgcacgggggcacctgcgag
aacgagggcaacgacttcagctgcaagtgtcccgccgggcgaggaggctccgtgtgcgag
aaggtgatcaagtacttcatcccgtcattcggaggccaatcgtacttggcgttccaaacc
atgagcgcctatcacacggtccgcatcgccatggagttccgggtatccgagatgaccggg
atcctgctctacaacggccaggacggcaagaaggacttcatctctctggctctggtgaac
ggcaaggtggaactcaggtttaacacaggttcgggaactggaacagttatcagcaaagta
caaatcaatcagggccgctggcatcagctggtggtgacgcgcaaccgccgcaacgccatg
ctcagcgtggacaacgagccgcacatcgagggtgaaagcccccgcggcacagatggcctc
aacctggacaccgacctgttcatcggaggagtgctcgaggaaatgaagcaggatgtgagg
gagcggacggcggtggccacaggtgtggtgggctgcatccgcctgctggatgtcaacaac
cgtgtgctgaacctgcaggagagcgggggggacagtctgtacggcagcggcgtgggcgaa
tgtggaaacaacccctgccagcccaacccctgcaagaacggagctgcatgccaggtcaag
gaggcagagatgttccactgcaagtgcagcaaaggattctggggtccaacttgtgctgac
gtccatgatccatgcgagcccaacaggtgccatccatcctcccagtgccaggcgctgccg
gagggaggctacaagtgcgagtgtcccatgggacgtgaggggaggcactgcgagaaaatg
gctgagaagagaggggcttacatgccgctattcgacggagactcttacgtggagctgaag
ggacttcacctctacgggcacgatctgcgtcaaaaggtcagcatgacggtgattctcaag
gccaacagctccaacggtttgatattctacaacggccagaaatcggacggaaaaggagac
ttcatctctctgtccctcaatgagggcatcctggagttccgctacgacctggggaaggga
cccgccaccatcaggagcatggaaccaatccagctgaatgtgtggaacaccatcaacctg
gagcgctccaaccgcaaaggggagatcatggtgaacaagaaggaccccgtccgaggagag
gcaccgaacctgcacgtagatcttaacctgaaagagtctcttttcgtcggcggagccccc
gattacagccggctagcgagagtcgctgcactcacggagggcttcaagggaacaatccaa
aagatcattctgatgggcaccccgatcctcagagaggagaacgccctgcgtgccagcaac
gtcgacatgttccaggagcacgcgtgttcccaggagccctgccaaaacggcgggcgctgc
aaccccatgctggacgcctacgagtgcgtgtgcctcagtgggttctcggggggccgttgt
cagaacaccatctatgagaagtctgcaggagagaccgaggccattgcctttgacggtcgg
acgttcatcgagtaccacaacgctgtcacaaagagtcccgagtctctggagaacccatct
gaccagagcgagaaggctctgctggtgaacaaatttgagctgagcatccggacggaggcg
acccagggcctggtgctgtggagcgggaagggcgtggagcgctccgactacatcgccctg
gccatcgttgacggacacatccagatgacgtacgacctgggctccaagcccgtggtgctg
cgctcctcggtgcgcgtcgacaccaacctctggatacgcatcaaggccagcagagcactc
agagacggctctctgcaggtcggcaatgaggcagcggtaacagggtcgtcgcccctggca
gccacgcagctggacacagacggagcgctgtggctcggtggtctggaggagctggcggtg
gcccgtcggttgcccaaagcctacagcacgggctacatgggctgcatcaaggacgtggtg
gtggacggcgtggagctccacctggtggaagacgccctaaacagccccaaaatactacac
tgctccgccgccaaataa
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