Pseudochaenichthys georgianus (South Georgia icefish): 117451304
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Entry
117451304 CDS
T09629
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117451304 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117451304 (eftud2)
Spliceosome [BR:
pgeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117451304 (eftud2)
Complex C
U5 SnRNP specific factors
117451304 (eftud2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
117451304
NCBI-ProteinID:
XP_033945425
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All DBs
Position
8:15282223..15312041
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLNAEDRDVDEADEDDDDEPADADEDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKRFTLTEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRLSDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIGELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSMYSVCFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFSKKAP
NSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQEGAKNKIEHTYTGGMETDLGEAMTECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIHSGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRSLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgatgagtttggaaactacatcggtccagagctggactctgac
gatgatgaagatgatctaaacgcagaggacagagatgttgatgaggctgatgaagatgat
gatgatgagcccgctgatgctgatgaagatgtcccgggtatggaggtggtcctgcatgaa
gacaagaagtactatcctacggcagaggaggtttatgggcccgaagtggaaaccattgtc
caagaggaagacacacagcctctcacagagcccatcatcaagcctgtgaagaacaagcgg
ttcaccctgacagagcaggagttacctgccactgtttatgatatggaattccttgctgat
ctgatggacggtcctgagctaattcgtaacgtgaccctgtgtggtcaccttcaccacggc
aagacctgttttgtggactgcctgattgaacaaacccacccagaaatcaggaagagagat
gatgtggatcttcgatacacagacatcctctttacagaacaggagagaggagttggtatc
aagagcaccccggtcacaatggtcctgccagactccagaggcaaatcctatcttttcaac
atcatggatacaccaggccacgtaaacttctctgatgaagtcacgtctagcattcgcctc
tcagacggtgttgtcctcttcatagacgcagcggaaggagtgatgctgaacacagagcgc
ctgatcaaacatgcagttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcattggagagctgaagttgcctccaacagatgcttattataaacttcgccacatt
gtggacgaggtcaatggtttgctcagcacatactccacagatgagaacttggtggtgtct
cctctgctgggaaatgtgtgcttcgccagctctatgtacagtgtctgtttcactctgggg
tcctttgcaaagatctactctgacacctatggtgacatcaactacaatgagtttgccaag
aggctttggggagacatttattttaaccccaaaactcgcaagttttcaaagaaagctccc
aacagtaactctcagcgcagctttgtggaatttgtccttgagcctctctacaagatcctc
tcacaggtggtcggggatgtggacacatctctccccagagttctggatgagctggggatc
cacctgactaaagaggagctgaagctgaacatcagacccttactgaggctggtctgtaac
cgcttctttggagagttcactggctttgtggacatgtgtgtacagcacatcccctctcca
caggagggggccaagaacaagatagagcacacgtacactggaggcatggaaacggacctg
ggggaggccatgacagagtgcgaccctgatggtcctttgatgtgccacaccactaagatg
tacagcacagaggatggggtccaattccacgcgtttggcagagtgctgagtgggaccatt
cattcagggcagcccgtcaaggttttaggagagaactacaccctggaagacgaggaggat
tcccaggtctgcactgtgggtcgtctctggatttcagttgccagataccaaattgaagtg
aaccgagtgcctgcaggaaactgggttctcatcgaaggttgtgaccagccaatcgtcaag
accgccaccatcacagagcccagagggaatgaagaggctcagattttcagatccctgaag
ttcaacacggcatcggttataaagatcgcagtggagccggtcaacccatcagagctgccc
aagatgttagacggactgaggaaggtcaacaagagctacccgtcgctcaccacaaaggtg
gaggagtccggagagcacgttatcttggggacaggagagctctacctggactgtgtcatg
cacgacctacgcaagatgtactctgagatcgacattaaagttgctgaccctgttgtgact
ttctgcgaaacggttgttgaaacgtcatcactcaagtgcttcgctgaaacgccgaacaaa
aagaataagatcaccatgattgctgagcccttggagaaggggctggctgaggacatcgag
aacgaagtggtgcagatcacgtggaacaggaagaagctgggagagtttttccagacaaag
tacgactgggatctgctggctgcccggtccatctgggccttcggaccggacaccacagga
ccaaacatcctggtagacgacacgctgccctccgaggtggacaaggcgctgctcggctca
gtgaaggacagcatcgttcagggcttccagtggggcaccagggaggggcctctgtgtgat
gagcccatcaggaatgtcaagtttaagatcctggacgcggtcattgctcaggagcctctc
cacagaggaggaggccaggtcatccccacagccaggagagtggtgtactccgctttcctc
atggccactccaaggttgatggagccgtattactttgtggaggttcaggctcctgctgat
tgtgtatctgctgtttacacagtgcttgctaggagaagaggtcatgtgacccaggacgca
cctattccaggctctcctctctacaccattaaggctttcatcccggccatcgactccttt
ggctttgagaccgacctccgcacacatacacagggacaggcctttgcgctgtccgtcttc
caccactggcagatcgtccctggcgaccccctggacaagagtattgtgatccggcccctt
gagccccaacctgctcctcacctggccagagagttcatgatcaaaacccgaaggcgcaag
ggtcttagcgaggatgtgagtatcagtaagttcttcgacgatcctatgttgttggagctg
gccaaacaggacgtggtgctcaactaccccatgtga
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