Pseudochaenichthys georgianus (South Georgia icefish): 117452000
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Entry
117452000 CDS
T09629
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010
MAPK signaling pathway
pgeo04137
Mitophagy - animal
pgeo04141
Protein processing in endoplasmic reticulum
pgeo04210
Apoptosis
pgeo04217
Necroptosis
pgeo04621
NOD-like receptor signaling pathway
pgeo04622
RIG-I-like receptor signaling pathway
pgeo04920
Adipocytokine signaling pathway
pgeo05132
Salmonella infection
pgeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117452000
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117452000
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117452000
09143 Cell growth and death
04210 Apoptosis
117452000
04217 Necroptosis
117452000
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117452000
04622 RIG-I-like receptor signaling pathway
117452000
09152 Endocrine system
04920 Adipocytokine signaling pathway
117452000
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117452000
09171 Infectious disease: bacterial
05132 Salmonella infection
117452000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117452000
04121 Ubiquitin system [BR:
pgeo04121
]
117452000
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117452000
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117452000
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117452000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-RING_4
zf-C3HC4_2
MATH
Sina_ZnF
zf-RING_6
zf-RING_5
zf-C3HC4_4
DUF5798
Motif
Other DBs
NCBI-GeneID:
117452000
NCBI-ProteinID:
XP_033946292
EnsemblRapid:
ENSPGEG00000002597
LinkDB
All DBs
Position
9:complement(4158610..4175729)
Genome browser
AA seq
570 aa
AA seq
DB search
MAAQEPSPPSTLEGNKPGFPKKILANNLDDEHLCNSCQKILRRPLQAQCGHRFCSFCFNK
IVSSGPQKCSACIKEELFEEPTSILKQGGAFPDNAARREVEALAAVCPNERCTWTGTIKE
FEACHEGKCDFMIILCPSCKELMRANEQERHVERECPEKTLNCKYCKEPFLLKNIKAHDE
ICPKYPLTCEGCAKKKIPRGKYVDHIKFCSKFKAPCRFHVVGCDTSVEKEKMHDHERQCS
YEHLNMLLHFIMGIKVSLESLQPQSLEAASHKLQELHQSLRELELQMSQLVGGGGLAASV
QGACAPTLAPSFTPLPSGVEAALELQLQSEKAKVVELSRRCQELELKVSTFENIVSVLNR
EMERSCTIVEAYNRQHRLDQDKIEILNNKVRQLERTVSLWDLSIVEMEGKMREMSAATYD
SIFVWKISDFTKKRQDAVGGRAPAMFSPAFYTSKYGYKMRLRIYLNGDGTGRGTHLSLFF
VVMRGNSDPLLKWPFNQKVTLMLLDQNSREHIIDAFRPDVSSSSFQRPVSGMNIASGCPH
FCPLSKLDSKNSYIRDDTIFIKAIVDLTGL
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacaggagccgtctccaccatccaccctggaaggcaacaaaccgggctttcca
aagaaaatcctagctaacaacctggatgacgagcatttgtgcaattcgtgccagaaaatc
ctgaggaggcccctgcaagctcaatgtggtcaccgcttttgttcgttctgcttcaacaaa
atcgtgagttctggacctcagaaatgcagcgcttgcatcaaagaagaattgtttgaagag
cccacctccattctcaagcaaggcggtgcctttcctgacaacgcagcgcggagagaggtt
gaggccttggcagctgtctgtcccaacgagagatgcacgtggacgggaactatcaaagag
tttgaggcctgccacgagggaaagtgtgacttcatgatcatcctgtgtccctcctgcaaa
gagctgatgagagccaacgagcaggagcggcacgtcgagagagaatgccccgagaagacg
ctcaactgcaaatactgcaaagagcccttcctgctaaagaacatcaaggctcatgatgag
atctgcccgaagtacccgctgacctgtgaaggctgtgcaaagaaaaagatccccagagga
aagtatgtggaccatattaaattctgcagtaaatttaaagcaccatgccgattccatgtt
gttggctgcgatacgtctgtggagaaagagaagatgcatgaccatgagaggcagtgctca
tacgaacacctcaacatgctcctgcatttcatcatgggcatcaaggtgagcctggagagc
ctgcagccccagagcctggaggccgccagccacaagctgcaggagctgcaccagtccctc
cgggagctggagctccagatgagccagctggtggggggaggggggttggcggcctccgtg
cagggtgcctgcgcccccaccctggccccctccttcaccccgctgcccagcggcgtggag
gccgctctggagctgcagctccagagcgagaaggccaaggtggtggagctgagccgccgc
tgccaggagctggagctcaaagtcagcacgttcgagaacatcgtgagcgtcctcaaccga
gagatggagcgctcctgcaccatcgtggaggcctacaaccgccagcacagactggaccag
gacaagatcgagatcctcaacaacaaggtccgtcagctggagaggacggtgagtctgtgg
gacctgtccatcgtggagatggaggggaagatgagggagatgtctgcggccacatacgac
agcatctttgtgtggaagatctccgacttcaccaagaagaggcaggacgccgtgggcggc
cgcgcccccgccatgttctcccccgctttttataccagtaaatacggctacaagatgcgc
ctgcggatctacctgaacggcgacgggacgggccgggggacgcacctctcactcttcttc
gtggtgatgagaggaaacagtgacccactcctcaagtggcctttcaaccagaaggtcacc
ctcatgctgctggaccagaacagcagggagcacatcatcgatgccttccggcccgacgtc
tcctcctcgtccttccagaggcccgtcagcggtatgaacatcgccagcggctgcccgcac
ttctgcccactctccaagctggactccaagaactcctacatacgtgacgacaccatcttc
atcaaggccatcgtcgacctcactgggctctag
DBGET
integrated database retrieval system