KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117452000
Entry
117452000         CDS       T09629                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010  MAPK signaling pathway
pgeo04137  Mitophagy - animal
pgeo04141  Protein processing in endoplasmic reticulum
pgeo04210  Apoptosis
pgeo04217  Necroptosis
pgeo04621  NOD-like receptor signaling pathway
pgeo04622  RIG-I-like receptor signaling pathway
pgeo04920  Adipocytokine signaling pathway
pgeo05132  Salmonella infection
pgeo05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117452000
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    117452000
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    117452000
  09143 Cell growth and death
   04210 Apoptosis
    117452000
   04217 Necroptosis
    117452000
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    117452000
   04622 RIG-I-like receptor signaling pathway
    117452000
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    117452000
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117452000
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117452000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgeo03019]
    117452000
   04121 Ubiquitin system [BR:pgeo04121]
    117452000
Enzymes [BR:pgeo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117452000
Messenger RNA biogenesis [BR:pgeo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     117452000
Ubiquitin system [BR:pgeo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    117452000
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-RING_4 zf-C3HC4_2 MATH Sina_ZnF zf-RING_6 zf-RING_5 zf-C3HC4_4 DUF5798
Other DBs
NCBI-GeneID: 117452000
NCBI-ProteinID: XP_033946292
EnsemblRapid: ENSPGEG00000002597
LinkDB
Position
9:complement(4158610..4175729)
AA seq 570 aa
MAAQEPSPPSTLEGNKPGFPKKILANNLDDEHLCNSCQKILRRPLQAQCGHRFCSFCFNK
IVSSGPQKCSACIKEELFEEPTSILKQGGAFPDNAARREVEALAAVCPNERCTWTGTIKE
FEACHEGKCDFMIILCPSCKELMRANEQERHVERECPEKTLNCKYCKEPFLLKNIKAHDE
ICPKYPLTCEGCAKKKIPRGKYVDHIKFCSKFKAPCRFHVVGCDTSVEKEKMHDHERQCS
YEHLNMLLHFIMGIKVSLESLQPQSLEAASHKLQELHQSLRELELQMSQLVGGGGLAASV
QGACAPTLAPSFTPLPSGVEAALELQLQSEKAKVVELSRRCQELELKVSTFENIVSVLNR
EMERSCTIVEAYNRQHRLDQDKIEILNNKVRQLERTVSLWDLSIVEMEGKMREMSAATYD
SIFVWKISDFTKKRQDAVGGRAPAMFSPAFYTSKYGYKMRLRIYLNGDGTGRGTHLSLFF
VVMRGNSDPLLKWPFNQKVTLMLLDQNSREHIIDAFRPDVSSSSFQRPVSGMNIASGCPH
FCPLSKLDSKNSYIRDDTIFIKAIVDLTGL
NT seq 1713 nt   +upstreamnt  +downstreamnt
atggctgcacaggagccgtctccaccatccaccctggaaggcaacaaaccgggctttcca
aagaaaatcctagctaacaacctggatgacgagcatttgtgcaattcgtgccagaaaatc
ctgaggaggcccctgcaagctcaatgtggtcaccgcttttgttcgttctgcttcaacaaa
atcgtgagttctggacctcagaaatgcagcgcttgcatcaaagaagaattgtttgaagag
cccacctccattctcaagcaaggcggtgcctttcctgacaacgcagcgcggagagaggtt
gaggccttggcagctgtctgtcccaacgagagatgcacgtggacgggaactatcaaagag
tttgaggcctgccacgagggaaagtgtgacttcatgatcatcctgtgtccctcctgcaaa
gagctgatgagagccaacgagcaggagcggcacgtcgagagagaatgccccgagaagacg
ctcaactgcaaatactgcaaagagcccttcctgctaaagaacatcaaggctcatgatgag
atctgcccgaagtacccgctgacctgtgaaggctgtgcaaagaaaaagatccccagagga
aagtatgtggaccatattaaattctgcagtaaatttaaagcaccatgccgattccatgtt
gttggctgcgatacgtctgtggagaaagagaagatgcatgaccatgagaggcagtgctca
tacgaacacctcaacatgctcctgcatttcatcatgggcatcaaggtgagcctggagagc
ctgcagccccagagcctggaggccgccagccacaagctgcaggagctgcaccagtccctc
cgggagctggagctccagatgagccagctggtggggggaggggggttggcggcctccgtg
cagggtgcctgcgcccccaccctggccccctccttcaccccgctgcccagcggcgtggag
gccgctctggagctgcagctccagagcgagaaggccaaggtggtggagctgagccgccgc
tgccaggagctggagctcaaagtcagcacgttcgagaacatcgtgagcgtcctcaaccga
gagatggagcgctcctgcaccatcgtggaggcctacaaccgccagcacagactggaccag
gacaagatcgagatcctcaacaacaaggtccgtcagctggagaggacggtgagtctgtgg
gacctgtccatcgtggagatggaggggaagatgagggagatgtctgcggccacatacgac
agcatctttgtgtggaagatctccgacttcaccaagaagaggcaggacgccgtgggcggc
cgcgcccccgccatgttctcccccgctttttataccagtaaatacggctacaagatgcgc
ctgcggatctacctgaacggcgacgggacgggccgggggacgcacctctcactcttcttc
gtggtgatgagaggaaacagtgacccactcctcaagtggcctttcaaccagaaggtcacc
ctcatgctgctggaccagaacagcagggagcacatcatcgatgccttccggcccgacgtc
tcctcctcgtccttccagaggcccgtcagcggtatgaacatcgccagcggctgcccgcac
ttctgcccactctccaagctggactccaagaactcctacatacgtgacgacaccatcttc
atcaaggccatcgtcgacctcactgggctctag

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