Pseudochaenichthys georgianus (South Georgia icefish): 117453026
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Entry
117453026 CDS
T09629
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117453026 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117453026 (kdm2ba)
04121 Ubiquitin system [BR:
pgeo04121
]
117453026 (kdm2ba)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117453026 (kdm2ba)
Enzymes [BR:
pgeo01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117453026 (kdm2ba)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117453026 (kdm2ba)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117453026 (kdm2ba)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117453026 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117453026 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
DUF7885
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
117453026
NCBI-ProteinID:
XP_071060486
LinkDB
All DBs
Position
9:complement(31419295..31435118)
Genome browser
AA seq
778 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKVGTSAAIKLPSNRSSSGARRRRTRCRKCEACV
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEEK
FNFMLMECSICNEIVHPNCLKVNDASGVVNDELPNCWECPKCNHAGKSGKALKQKRGPGF
KYASNLPGSLLREQKSLKEEGDASTAVKRRPDREETPRYRPEETLHRQPPLLSPSNLPRP
RPEDKLRKKRKLFDDDEEEDLGMRKKEKSDDPYYSKLLHHIKTEEEDEDPYEEEDEEGRV
PHFRGGVERRGRFGDPEDEADERDSRSSLLNPSVKTPFGDSDQSLCSSPQAGPSSEGGSE
TQEKGPRRKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPQTENEEPQ
RLFRNELGDQRPHLKNKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPHSPPKCVQM
ERHVIRPPPISPPPDRLPLKDGKSHVIQREVWMKIFGYLTHQELCVCMRVCKTWNRWCCD
KRLWTMIDLNRCTSITPLMLSGIIRRQPGSLDLSWTNISKKQLGWLINRLPGLRVLKLSG
CSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVEDL
RLAGLDITDTSLRLISRQMPSLSMLDLSYCNHINDQSVNLLTAAGTTTRDSLTDINLSVC
NRVTDHSLNFFKRCGSICQIDLRFCKQVTRTACERFIAEMSVSVPFRLKEDKLLQKAS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcactgagcggagacgatgaggaatatgattcagagtctgagcagcagcgg
gcggccaaccgcccgaagccgaaggttgggacgtcggcggccatcaagctgccgtccaat
cgcagctcatcgggagcgagacgcaggaggacgcgatgccggaagtgcgaggcgtgcgtc
cggaccgagtgtggagagtgtcacttctgcaaagacatgaagaagttcggagggccgggg
cgcatgaagcagtcctgcatcatgaggcagtgcattgcaccggtgctgcctcacacggcg
gtgtgtgtggtgtgtaaggaggccgggaaagaggacacactggaggaagaggaggaaaag
ttcaacttcatgctgatggagtgctccatctgcaacgagatcgtccatcccaactgcctg
aaggtgaacgatgcctcaggggtggtgaacgatgagctgcccaactgctgggaatgcccc
aaatgcaaccatgctggaaaaagtggaaaagcattgaaacaaaaaaggggtccagggttc
aagtacgcctccaacctcccgggctctctgctgagggagcagaagtccctgaaggaggag
ggggacgcgtccacagcggtgaagaggaggccggacagagaggagacccccaggtaccga
ccggaggagactctccaccgacagccccccctgctctcccccagcaacctgccccgcccc
cggcccgaggacaaactgaggaagaagaggaagctgtttgatgacgatgaggaagaggat
ctcggcatgaggaagaaggaaaagtcagatgatccttattattccaaactcctacatcat
ataaagacagaagaggaggacgaagacccctatgaggaggaggatgaagaaggcagggtg
cctcacttcaggggaggtgtagaaaggagagggcgttttggggaccctgaagacgaagca
gatgagagggactccaggagttcactcttaaacccctctgttaaaactccttttggagac
agtgaccagtcgctctgcagctccccgcaggccggccccagcagcgagggcggcagtgag
acccaggaaaagggtccgcgtcgcaaagcccgccggaagcgccgtttacccaacagagag
ctgagccgggagctgagcaaagccctgaaccaggagatccagaaaacggaggactgcctg
gccaacgagaaccggcagcccctcaaggtggagccgcagacggagaacgaggaaccccag
aggctgttccgcaacgagctgggggatcagaggccccacctcaagaacaaagagatgaac
gggaccccctgggagctgcgccacttctaccccagtcagatcaccccgctgggcttcaat
aggagcacccccaccaaccggcccgtgcccccacactccccgcccaagtgtgtccagatg
gagcggcacgtcatccggccgcccccgataagcccgccccccgacagactgccgctgaaa
gacgggaaatcacacgtcattcagcgagaggtgtggatgaagatcttcggatacctcacc
caccaggagctgtgtgtctgcatgagggtctgcaagacgtggaacagatggtgttgtgat
aagagactctggacgatgatcgacctgaaccgctgcacctccatcacgcctctcatgctg
agtgggattatccgccggcagccgggctccctggacctcagctggaccaacatctccaag
aaacaattgggctggcttataaacagattgccaggtcttcgggtgttaaagttgtcgggg
tgttcctgggcggcggtttctgcgctctgcacctccagctgccctctgctgcgcaccctg
gacgtccagtgggtagaggggctcaaagacgctcagatgagggacctcctctctcccccc
acagacaacagaccaggtcagctggataaccgctgcaagctgcggaacgtggaggacctg
cgcctggcggggctggacatcaccgacacgtctctacgcctcatcagccggcagatgccc
tctctctccatgctggacctgagctactgcaaccacatcaacgaccagtcggtcaacctg
ctgaccgccgccgggaccaccaccagggactccctcacagacatcaacctgtcagtttgt
aaccgggtcacagaccattccctgaactttttcaagcgctgcggcagcatctgtcagatc
gacctgcgcttctgcaagcaggtgacgaggacggcctgcgagcgcttcatcgcagaaatg
tcagtgagcgtgccgttcagactgaaagaggacaaactgctgcagaaggccagctag
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