Pseudochaenichthys georgianus (South Georgia icefish): 117453639
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Entry
117453639 CDS
T09629
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117453639 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117453639 (kdm2ab)
04121 Ubiquitin system [BR:
pgeo04121
]
117453639 (kdm2ab)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117453639 (kdm2ab)
Enzymes [BR:
pgeo01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117453639 (kdm2ab)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117453639 (kdm2ab)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117453639 (kdm2ab)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117453639 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117453639 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
LRR_6
VPS13_N
Cupin_8
Motif
Other DBs
NCBI-GeneID:
117453639
NCBI-ProteinID:
XP_033948416
LinkDB
All DBs
Position
10:complement(19332823..19347583)
Genome browser
AA seq
1318 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFNLDEKLQCSRFNSELIKHMEGKDF
TFEYIQREGLREPIIFEAANGLGIQMPDSDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYDTPPSEREKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCFDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCQTNISHLTPEFKKYSLGVG
LTKADMENIDSNKNGTSNGVDSDTENKEIKEEAVKEQDEEEAKETEAQHLLTPFELEGLW
NLLGKLEGLPEQKKCVPVGILNPDALLDDMKTLLKGHVNDDAKLSYTGEPIVKWPKRPSW
YQPPTPPPPVIYRPRLGTKPLRSIKRSSISALRRRRVRCKRCAACCRKECGTCQFCHDMR
KFGGPGRMKKGCIMRRCLTPALPNTARCAICVEGESDESNPSTHSLMECSVCSQIVHRQC
NKEPGEGKINKDLPSCWECPKCYHGKDSGSESTSDEESGESEGSTALPPIKRPYREGIGV
GARRGTRSGSSSRPTAPPPSQKLLLQHQQNRQRANALELRLKKRIKLERSKMLTKQSSQE
RSPRSLCSRLPSRLRSATSRLSQGRGRGSTWARAPPHPSSPGGMGSLLQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSLGLALEPKGEARRGRGRGVRLRGGG
AGRGMRSGRSHEELESEDSSSSNSSSSSSSDEEEGQNSGRGLDKENQPQSRREAAKEREE
DLSEAANQNRAEEEDEEESEQDGETVRRKVAVQKPRTRAQRDPSAIVPKLEAIAPQTPPS
TIHNQSRVLARPPIRNRGPDPHSSKHARPHTPSGHTDNRERLEDSQKTRPAKLSNGASSS
STPDLPHLRIPLSALQEGGGEAERENGASGPGCEREVWVSVFRYLSRADLCVCMAVCKNW
YKWCLDKRLWARIDLSIKRTVTPQALTGIIKRQPITLDLSWTNISKKQLSWLVGRLPGLK
DLMLAGCSWLSISALCSSACPLLRSLDLRYADGVKDSQIRDLVTPPGCDNRSQLRNMQCL
RLAGLDISDSTLRLVIRHMPHLTKLDISHCNNLTDNSINLLTAVGSSTRNTVTELNLGGC
SKLSDTCLKYLRRLACISLLDLRRCNGVSRKACEAFISELSVNMLYFLSDEKLIQRIS
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccctcatacacggtacagcaaacgcctgcgtacagggacgcgacgccgctac
caagacgatggaatctcagacgatgaaattgaagggaagcggatgttcaacctggacgag
aagctgcagtgcagcaggtttaactctgaattgatcaaacacatggagggaaaagatttc
acatttgagtacatccagagggaagggctcagggagcccattatctttgaggcagccaat
ggccttggcatacaaatgccagactctgatttcagtgtgagtgatgtcaagttgtttgtc
ggaagtcgacgaattgttgacgtgatggatgtgaacacccagaaaggaatcgagatgtcg
atggctcagtggagacgctactatgacacgccgccatcagagagagaaaaactctacaac
gtcatcagtctggagttcagccacaccaagctggagaatctggtgaaacggccggcttcg
gtggacctcattgactgggtggacaacatgtggcctcgccacctcaaggagagacagaga
gactccactaacgccatcatagacatgcattatcccaaagtgcagaagtactgtctcatg
agtgtgcagggctgcttcacagatttccacatcgactttggaggcacttccgtctggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccccagaacctggag
atgtacgagaactgggttttatcaggaaaacagggagacatcttcttgggggacaagtgc
tttgactgtcagaggatagaactcaagcaaggaaacaccttcataatcccatcagggtgg
atccatgctgtgtacaccccagaggacacgttggtgtttggggggaatttcctccacagc
tttaacatccccatgcagctcaacatctacagcatcgaggatcgcacacgggtgccagca
aagttccgctaccctttttactatgagatgtgctggtacgtcctggagagatacctctac
tgtcagaccaacatctcccatctcactcctgagttcaaaaaatactccctgggcgtagga
ctgaccaaggctgacatggaaaacatcgactccaacaagaatggcacctctaatggagtc
gacagcgacactgagaacaaggagataaaggaagaggcggtcaaagaacaggacgaagag
gaagctaaagagacagaagctcaacacctgctgactccctttgagctggaggggctgtgg
aacctcttggggaagctggaggggctgccggagcagaagaagtgcgtccctgtgggcatc
ctgaacccagacgccctgctcgatgacatgaagactcttctaaaggggcatgtcaatgat
gacgccaaactgtcctacactggagagcccatcgtcaagtggcccaaaaggccttcatgg
taccagccccccactccccctccccccgtcatttaccgtcctcgcttgggaaccaagccc
ctgaggtccatcaagcgctcctccatctccgccctgcggcgccggcgggtcaggtgtaag
cgctgcgccgcctgctgcaggaaagagtgcggcacctgccagttctgccacgacatgagg
aagttcggtggtccggggcgcatgaagaagggctgcatcatgagacggtgtctaacgcct
gccttgccgaacacagcgcgatgtgccatatgtgtagaaggggagtctgacgaatcaaat
cccagcactcactccctgatggagtgctctgtgtgctcgcagatagtccatcgtcaatgc
aataaggagcctggtgaagggaaaatcaataaagatctacccagctgctgggaatgtccc
aaatgttaccatggaaaagactcaggctcagagtctaccagcgatgaggagagtggagag
tcggagggctcaaccgctctgccaccgatcaaacgcccctaccgggaaggcatcggcgta
ggggcgagacgagggacacgtagcggttcctcctcccgacccacggctcccccaccgtct
cagaagctgctcctgcagcatcaacagaaccgacaaagagcaaatgcactggagctcaga
ctgaagaagaggataaaactagagcgcagcaaaatgttaacgaagcagtcgtctcaggag
cgttccccccgctcgctgtgctccaggttgccgtccaggctgcgctccgccaccagcaga
ctctctcagggccgaggccggggctccacctgggccagagcacctcctcaccccagctct
ccaggggggatggggtctttgctgcagcagcaacagcagcagcagcaacagcagcagcag
cagcaacagcagcaacagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
cagcagcagcagcagcagcaacaacagcagcagcagcagtcttccctcggtctggcactt
gagcccaagggagaggctcgccgagggagggggagaggggtgaggctgcgggggggagga
gcggggagaggcatgagaagtggtagaagccatgaagagttggagtcggaggacagcagc
agcagcaacagcagcagctccagcagcagcgacgaggaagaggggcagaacagcgggagg
gggctggataaggagaaccagccacagtcgaggcgagaggcagccaaagagagagaggag
gacctgagcgaggcggccaaccaaaacagagcggaggaggaggatgaggaggagagcgag
caggacggtgagacggtgaggagaaaagttgcagtccaaaagcccagaaccagagcccag
cgggacccgtcggctatcgtccccaaattggaagccatcgcccctcaaactcccccttcc
acaatacacaaccagagcagggtcctcgccagaccccccattaggaaccgcggtcctgat
ccacactccagtaagcacgcacgcccacacacaccgagcggacacacagacaatcgagag
aggctggaggactctcagaaaaccaggccggctaaactgagcaacggcgcctcctcttcg
tcgacccccgatcttccacatctgcgcatccctctgtccgccctgcaggagggggggggc
gaggcagagagggagaacggagccagcgggccgggctgcgagagggaggtctgggtctct
gtcttccgttacttgagtcgggcagatctctgcgtctgcatggccgtctgcaagaactgg
tacaaatggtgtttagacaagcggctatgggcccggatcgacctgagcatcaaacgcacc
gtgactcctcaggctctgacgggcatcataaagagacagccaatcacactcgatctctct
tggaccaacatctctaaaaaacagctcagctggctcgttggccgacttcctgggctgaag
gatctgatgctggccgggtgttcatggttatccatttccgctctctgctcctctgcgtgc
cctctcctccgctctcttgacctgcggtatgcagacggagtcaaagactctcagatcagg
gatctagtcacccctccaggttgtgacaatcgcagtcagttgcgcaacatgcagtgtctg
cgtctagccggcctggacatcagcgactccaccctgcgcctggtgatccgccacatgcca
catttaacaaaactggacatctcccactgcaacaacctcacggacaactccatcaacctg
ctgactgcagtgggctcctccacccggaacaccgtcacagaactcaacctgggaggttgc
agtaaactgtcagatacgtgtctaaagtatctccgccgcctcgcctgcatctctctgctc
gacctgcgaagatgtaacggcgtctcccgaaaggcctgtgaggccttcatctccgagctg
tcagtcaacatgctctacttcctatcagatgagaaactgatccagaggatatcctag
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integrated database retrieval system
