KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117455047
Entry
117455047         CDS       T09629                                 
Symbol
tnfa
Name
(RefSeq) tumor necrosis factor a (TNF superfamily, member 2)
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010  MAPK signaling pathway
pgeo04060  Cytokine-cytokine receptor interaction
pgeo04150  mTOR signaling pathway
pgeo04210  Apoptosis
pgeo04217  Necroptosis
pgeo04350  TGF-beta signaling pathway
pgeo04620  Toll-like receptor signaling pathway
pgeo04621  NOD-like receptor signaling pathway
pgeo04622  RIG-I-like receptor signaling pathway
pgeo04625  C-type lectin receptor signaling pathway
pgeo04920  Adipocytokine signaling pathway
pgeo05132  Salmonella infection
pgeo05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    117455047 (tnfa)
   04350 TGF-beta signaling pathway
    117455047 (tnfa)
   04150 mTOR signaling pathway
    117455047 (tnfa)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    117455047 (tnfa)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    117455047 (tnfa)
   04217 Necroptosis
    117455047 (tnfa)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    117455047 (tnfa)
   04621 NOD-like receptor signaling pathway
    117455047 (tnfa)
   04622 RIG-I-like receptor signaling pathway
    117455047 (tnfa)
   04625 C-type lectin receptor signaling pathway
    117455047 (tnfa)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    117455047 (tnfa)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117455047 (tnfa)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117455047 (tnfa)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:pgeo04052]
    117455047 (tnfa)
   00536 Glycosaminoglycan binding proteins [BR:pgeo00536]
    117455047 (tnfa)
Cytokines and neuropeptides [BR:pgeo04052]
 Cytokines
  Tumor necrosis fators
   117455047 (tnfa)
Glycosaminoglycan binding proteins [BR:pgeo00536]
 Heparan sulfate / Heparin
  Cytokines
   117455047 (tnfa)
SSDB
Motif
Pfam: TNF VP9
Other DBs
NCBI-GeneID: 117455047
NCBI-ProteinID: XP_033950291
LinkDB
Position
11:complement(3349324..3351748)
AA seq 239 aa
MEGECKVMLEATVEPGSTSQSVKPWSKLTTALMVFTLCLASTAAAVLLFNRQAKGPGQDE
NTFDLRHALRQLPNEKAAIHLVGHHNSSRKNSIEWNDDGDQTHSQGGLKLKRNEIVIPRH
GLYFVYSQASFHVNCLSSDAEEGLPQPLVHLSHTVQRWSDTFGKDDEDSYQTIMHSLRTA
CQMKPSSDLDEEGLWYSTVNVGAVFNLRKGDRLRTLTEEKTLPDLEDESGDTFFGMFQL
NT seq 720 nt   +upstreamnt  +downstreamnt
atggaaggtgaatgcaaagtaatgctggaagcaacagtggaaccaggatccacgagccaa
tcggtgaagccgtggtcgaagctcaccacggccctgatggtgttcacactctgcctcgct
tcgactgccgccgccgtgctgctcttcaacaggcaggccaagggcccgggacaagatgaa
aacacttttgatctccgccatgcattgaggcaacttccaaacgagaaagcggccattcat
ttagtcggacatcacaactcttccaggaagaactccattgaatggaacgacgatggtgac
cagacccactctcaaggaggtctgaaactcaaaagaaatgaaattgtgattcctcgacat
ggcctctacttcgtatacagccaagcgtctttccacgtcaactgcctcagcagcgatgct
gaagaaggcctcccacagcccctggtccacctgagtcacaccgtgcagcgctggtcagac
acttttgggaaagacgacgaggattcctaccagaccatcatgcactctctccgcaccgcc
tgccaaatgaaacccagcagtgatctggatgaggaggggctgtggtactccactgtgaac
gtgggggctgtgttcaacctcaggaaaggggaccgacttaggacgttgacggaagagaag
actttgcccgatctggaggatgaaagcggggacactttcttcggaatgtttcaattgtga

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