Pseudochaenichthys georgianus (South Georgia icefish): 117455418
Help
Entry
117455418 CDS
T09629
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117455418 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117455418 (kdm2aa)
04121 Ubiquitin system [BR:
pgeo04121
]
117455418 (kdm2aa)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117455418 (kdm2aa)
Enzymes [BR:
pgeo01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117455418 (kdm2aa)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117455418 (kdm2aa)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117455418 (kdm2aa)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117455418 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117455418 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JmjC
JHD
F-box
Cupin_8
PHD
C1_1
BUD22
Motif
Other DBs
NCBI-GeneID:
117455418
NCBI-ProteinID:
XP_033950829
LinkDB
All DBs
Position
1:complement(1428971..1446747)
Genome browser
AA seq
1319 aa
AA seq
DB search
MDASKPRCSKRLRPGTRRRYHDDGISDEEIDGRRMFDLEDKVHSERFGSNRVLRMEGKDL
TYEFVQREGLRDPILFEKPEGLGIKMPDPDFSVNDVKMFVGSRRMIDVMDVSTQKGTEMS
MAQWTRYYETPPSQREKLYNVISLEFSHTKLENLVRRPTTVDLIDWVDNMWPRHLKERQR
DSTNSITDMQYPKVQKYCLMSVEGCYTDFHIDFGGTSVWYHILRGSKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDRASDCQRVELKQGCTFIIPSGWIHAVYTPVDSMVFGGNFLHS
FNIPSQLNICNIEDRTRVPLKFRYPFFYEMCWYVLERYVFSLTKTSYLTPEFQKHTLGIG
LKKPASSDPAIEQLKEEEGEERDEGSSDEEFDVKLHLTPLELEGMWNLLGKLEALPSNKK
CLPAGIHNAPALITHIKALLKEHASDNPKLSYSGKPIVKWPKRPSWYQPPPPPPPPPRPK
LASTPITPRPQKPASSMSVLRRRRVRCKRCEACMRPECGDCNFCRDMKKFGGPGKLKQTC
VLRQCLSPGLPLSAVCEICKEPNQEETGDPSLTLMECSNCAQIVHPACLTVQGEGVVNKD
LPSCWECPKCVQGITDPESSGSDEPLAAGHQQHIRPRGPLVLRLGPGPSATIGGPVGTQQ
DGEVIRCGFFTPPLPSCASSSSLLLVAAPLPSQPISSRLQSKGDTGEGLPAKRKSSSLLD
ARMAKIYRRQRHSHDGDDSASDDDDDDDDEDDDDNEASRRRKALYARGGGHSARRGFGAS
RRGLLRGGLARRGHLAAGSSSALKLKRGMGVREAGRRGRGVRLRGGSRMQRRGEESEESD
DDDDDDDDEEEDSEDADKEQLPRRRRRRRQTDDEDEDSEGQDFDPEDEDMDTLEDEGEEE
DEEGRWDSDPEPPVLLVSDLNDDLLSGSYLTVTLQRPHRAKRHAGSIVPKLEAAMGVRTA
AGGAAGQQGFIQRKTLSKPSRLKSADSAADSGTPRGPGRPRMRGNHGDRGTRDHSVTSSE
EEEAAASSVPSSLSPPSLLSLPSFKDVGNESGGEKEVWVSVFQYLDRAQLLACMTVCKAW
YKWSCDKRLWSHVDVSRCSPLSNQVLAGIIKRQPASLDLSWTPLAKRQLNCMLTRLPGLR
ELRVTGLSWSCLSALVSPTLPCLRLLDLRWCEGLKDAQIKEILTPPGLESSRSRLRNMVT
LRLSGLDVSESTLRLLQRHMPQLQRLDLAHCKDITDSSISLLAAAGSHSRNNLTELTLAG
CSELTDGCLSYLKRLSSLTLLDLRGCKSISRRACDAFISDLSHVALFCMMEENLIQRLD
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatccaagccaaggtgcagcaaaaggctgcggcccggcacccggcgacgttac
catgacgatggcatctcagatgaggagattgatggaagaaggatgtttgacctggaggac
aaggttcacagtgagaggttcggctccaaccgggttctgcgcatggaggggaaagacctg
acgtacgagttcgtccagagagagggcctgagggacccgatcctctttgagaagcctgag
ggcctgggcatcaagatgcctgaccccgacttcagtgtcaacgatgtcaagatgtttgtt
ggcagcaggcgtatgattgatgtgatggacgtgagcactcagaaagggacggagatgtcg
atggcccagtggacacgctactacgagacccccccgtctcagagagagaagctctataat
gtcatcagcctggagttcagccacacaaagctggagaacctggtcaggagacccaccacg
gtagatttgatcgactgggtggacaacatgtggccccgtcacctgaaggagagacagaga
gactcaaccaactctatcaccgacatgcagtaccccaaggtccagaaatactgtctcatg
agtgtggagggctgctacactgactttcacattgactttggagggacctcagtgtggtac
cacatcctccgaggaagcaaggtgttctggctgatccctcccacccctcagaacctggag
ctctatgagaactgggtgctgtccgggaagcagggagacattttcctgggagaccgagca
tctgactgccagagggttgagctgaagcagggctgcaccttcatcatcccctcaggttgg
attcatgcggtgtacacccctgtggactccatggtgtttggaggaaacttcctgcacagc
ttcaacatcccctcgcagctcaacatctgtaacatcgaggacagaacgcgcgttccattg
aagttccgctaccccttcttctatgagatgtgctggtacgtgttggagcgctacgtcttc
agcctgaccaaaacctcctacctcacaccagagttccagaagcacacgctgggcattggt
ctgaagaagccggccagctcggatcccgccatcgagcagctgaaggaggaggagggggaa
gagagggatgagggaagcagtgacgaagagtttgacgttaaacttcatctgactcccctt
gagctggaggggatgtggaacctgctgggtaagctggaggctctgccctccaacaagaag
tgcctccccgcaggcatccacaacgccccggctctcatcacacacatcaaggctctgctg
aaggaacacgccagtgacaaccccaaactgtcgtactccgggaagcccatcgtcaagtgg
ccaaagagaccctcctggtaccagcctcctcctccacctccaccccctcctcgccctaaa
ctggcctccacccccatcaccccccgaccacagaagcctgcctcctccatgtctgtgctg
aggcgccgcagagtcaggtgtaagcgctgcgaggcctgcatgagacccgagtgtggagac
tgtaacttctgcagagacatgaagaagtttggaggacctgggaaactcaagcagacctgt
gtgcttcggcagtgtctctctccgggcctccctctgtctgcagtgtgtgagatctgcaaa
gagcccaatcaggaggagactggagacccctccctcactctgatggaatgttccaactgt
gcacagatagtgcaccccgcctgcctcacggttcaaggtgagggggtggtgaacaaagac
ctgcccagctgctgggagtgtccaaagtgtgtccaaggcatcactgacccagagtcgtca
ggcagcgatgaaccgttggctgcaggccaccagcagcacatccggccccgaggccccctg
gtcctcagactgggccccgggccctctgctaccatagggggtcctgtgggcacccagcag
gatggggaggtgattcgctgtgggttcttcactcctcctcttccttcctgcgcttcctcc
tcctcacttctattggtggcggcccctctgccttctcagccaatcagctcgagactgcag
tctaaaggagacacaggggaaggccttccagcgaagcggaaatcttcctcgctgctggac
gcccgtatggctaagatttaccgccgacagagacacagccatgatggagacgactctgcc
agtgatgatgatgatgatgatgatgatgaggatgatgatgataatgaagcctctcgcaga
agaaaggcactctatgcccgaggaggggggcactctgccaggaggggctttggggccagc
aggagagggctactgagggggggcttggcccgcagggggcacctggctgctggctcctcc
tcagcactcaagctgaaacgagggatgggcgtgagggaagcagggaggagggggcgaggg
gtgaggctgaggggaggctccaggatgcagcgaagaggagaagagtccgaagagtcagat
gatgacgacgatgatgacgatgatgaagaagaggacagtgaagatgcagacaaagaacaa
ctgccccgtcgacggaggaggaggcggcagactgatgatgaagacgaggacagtgagggg
caggactttgaccctgaagacgaggacatggacacactggaagatgaaggggaggaggag
gatgaggaagggcgctgggattccgacccagaacccccagtgcttctggtgtcagatctg
aacgatgatctgctgagcggctcctacctgacggtaaccttgcagcggccacacagggcc
aagagacacgcaggctctatagttccaaagctagaagcagccatgggtgtgaggacagct
gcggggggggctgcaggtcagcagggcttcatccagaggaagactctgtccaaaccctcc
cgactgaagagtgctgactcagcagctgacagtggcaccccgagaggaccgggaaggcca
cgtatgcgaggtaaccatggcgacagaggcactcgagatcactctgtgacttcctcagag
gaagaggaagctgctgcgtcttctgtgccctcttccctgtctcccccctccctgctgtct
ctgccctcctttaaggacgtgggcaacgagagtgggggggagaaggaggtgtgggtgtca
gtgttccagtacctggaccgagcccagctgttggcctgcatgaccgtctgcaaggcctgg
tacaagtggagctgtgacaagcgtctgtggagccacgtggatgtgagccgctgcagcccg
ctaagcaaccaggtgctggccggcatcatcaaacgccagcccgcctctctggatctgtcc
tggacccccctggccaagagacagctcaactgtatgctcaccaggctcccaggtctgagg
gagctgagggtaacggggctgtcctggtcctgcctgtcggcgctggtctcccccacgctg
ccctgcctgcggctgctggacctgcgctggtgtgaaggcctcaaagatgcccagattaaa
gagatcctcacccctccaggcttggagtcgtcccgcagcagattgaggaacatggtgacg
ctgcgcctgtcggggctggatgtcagtgagtccactctgcggctgctgcagcgccacatg
ccccagctgcagaggctggacctggctcactgtaaggacatcacagactcctccatcagc
ctgctggcagccgccggctcacacagccgcaacaacctcactgagctcacgctggcaggt
tgtagcgagctgacggatggctgtctgtcctacctgaagcgtctgtcctctctgactctg
ctggacctccgaggctgtaagagcatcagccgacgggcctgcgacgccttcatctctgac
ctgtcccacgtggccctcttctgtatgatggaggagaatctcatccagcgcctggattaa
DBGET
integrated database retrieval system
