Pseudochaenichthys georgianus (South Georgia icefish): 117456685
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Entry
117456685 CDS
T09629
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010
MAPK signaling pathway
pgeo04137
Mitophagy - animal
pgeo04141
Protein processing in endoplasmic reticulum
pgeo04210
Apoptosis
pgeo04217
Necroptosis
pgeo04621
NOD-like receptor signaling pathway
pgeo04622
RIG-I-like receptor signaling pathway
pgeo04920
Adipocytokine signaling pathway
pgeo05132
Salmonella infection
pgeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117456685
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117456685
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117456685
09143 Cell growth and death
04210 Apoptosis
117456685
04217 Necroptosis
117456685
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117456685
04622 RIG-I-like receptor signaling pathway
117456685
09152 Endocrine system
04920 Adipocytokine signaling pathway
117456685
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117456685
09171 Infectious disease: bacterial
05132 Salmonella infection
117456685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117456685
04121 Ubiquitin system [BR:
pgeo04121
]
117456685
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117456685
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117456685
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117456685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
ATG16
zf-C3HC4_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
117456685
NCBI-ProteinID:
XP_033952522
LinkDB
All DBs
Position
12:22253571..22262185
Genome browser
AA seq
597 aa
AA seq
DB search
MATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCSACIKEDIFEEPTSLLKQGCAFPDNAVRREVENLSAVCIHENCTWKGSIKD
YELNHEGKCEFMILPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKIHDHERTYA
YEHLNLLLHYIMGMKVSMEGLQPQGLEVAGHKLLELQQSLRELEARVSQLSTTSSGPPVQ
GAATASTSSSSSGPPGPPTLAPLPPPPTLAPTLSVSTSFTPLPSSVGAALELQLHSEKTK
VVELGRRCTELEVKSGTFENVVCVLNREVERFATTMEASNRQHKLDQDKIEALSNKVRQL
ERTVGLKDLTVADMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAMFSPAFYTS
KYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREHII
DAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggccacacaggagccgtcccccccctcctccatggagagcaataaacccggcttcccc
aagaagatcctgggcaacaagctggaggacaagcacctgtgcaactgctgccacaacatc
ctgcgacggccctttcaagcccagtgtggacatcgcttctgttcctactgcttcaacagg
actgtcagtaatggaccccagaagtgcagtgcctgtattaaagaggatatttttgaagaa
cctacatcgcttttgaaacaaggatgtgcttttcctgacaacgcagttcggagggaggtc
gaaaacctttcagctgtttgtatccatgaaaattgcacttggaaaggcagcattaaagac
tatgagctgaaccacgaggggaagtgtgagttcatgatcctcccctgcccctcctgtaaa
gaacgaatccgcttcaatgaacaggagcgccataatgagcgagagtgtccggagagaaca
ctcaactgcaagtactgcaaggagccatttcacttcaaaaacatcaaggcacatgatgag
atctgtcccaagtacccgatgatctgtgaaggctgtgccaagaagaaaatacccagagag
aagtacgtggaccacattaagttctgcagcaaattcagaacaccgtgtcgatttcatgtc
gtgggatgtgatatgtctgtggaaaaggaaaagattcatgaccatgagcgcacctatgcc
tacgagcacctcaacctgctgctgcactacattatgggcatgaaggtgagcatggagggc
ctgcagccccagggactggaagtagctggacacaagctgctggagctccaacagtccctc
agggagctggaggccagagtctcccagctcagcaccacctcctctgggcctcccgtgcag
ggagcagccactgcctccacctcatcctccagctccggcccccctggtccacccacttta
gctcctctccctccccctcccaccctggctcccactctctccgtctctacctccttcacc
cccctgcccagctcggtgggtgcggcgctggagctccagctccacagcgagaagaccaaa
gtggtggagctgggtcgcaggtgtacggagctcgaggttaaatccggcacgtttgaaaat
gtggtgtgtgtcctgaacagagaggtggagcggtttgccaccaccatggaggccagcaac
cgtcagcacaaactggaccaggacaagatcgaggctctgagtaacaaggtgcgacagctg
gagaggacggtggggctgaaggacctcacggtggctgacatggagggccggctgagggaa
atgtctgccacaacctttgatggcgtcttcgtctggaggatctctgatttcgccaaaaag
agacaagatgccatcgccggtcgagcccctgctatgttttcaccagccttttacaccagt
aagtacggatataagatgtgtctgcggatctatctgaatggagatgggacggggcgtggc
agccacttgtccctgttctttgtggtgatgaggggactgagtgacgctctgctcaaatgg
cctttcaaccagaaggtgactctgatgctgctggaccagagcaacagggagcacatcatc
gacgcctttcgccccgatgtcacttcatcttccttccagcgaccggtgagcgagatgaac
atcgccagcggctgtccgctcttctgcccgctctccaagctcgatgccaagaattcctac
atccgcgacgacaccatcttcatcaaggccatcgtggacctcaccggcctctag
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