KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117456685
Entry
117456685         CDS       T09629                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010  MAPK signaling pathway
pgeo04137  Mitophagy - animal
pgeo04141  Protein processing in endoplasmic reticulum
pgeo04210  Apoptosis
pgeo04217  Necroptosis
pgeo04621  NOD-like receptor signaling pathway
pgeo04622  RIG-I-like receptor signaling pathway
pgeo04920  Adipocytokine signaling pathway
pgeo05132  Salmonella infection
pgeo05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117456685
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    117456685
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    117456685
  09143 Cell growth and death
   04210 Apoptosis
    117456685
   04217 Necroptosis
    117456685
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    117456685
   04622 RIG-I-like receptor signaling pathway
    117456685
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    117456685
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117456685
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117456685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgeo03019]
    117456685
   04121 Ubiquitin system [BR:pgeo04121]
    117456685
Enzymes [BR:pgeo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117456685
Messenger RNA biogenesis [BR:pgeo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     117456685
Ubiquitin system [BR:pgeo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    117456685
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 ATG16 zf-C3HC4_2 zf-C3HC4_4
Other DBs
NCBI-GeneID: 117456685
NCBI-ProteinID: XP_033952522
LinkDB
Position
12:22253571..22262185
AA seq 597 aa
MATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCSACIKEDIFEEPTSLLKQGCAFPDNAVRREVENLSAVCIHENCTWKGSIKD
YELNHEGKCEFMILPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKIHDHERTYA
YEHLNLLLHYIMGMKVSMEGLQPQGLEVAGHKLLELQQSLRELEARVSQLSTTSSGPPVQ
GAATASTSSSSSGPPGPPTLAPLPPPPTLAPTLSVSTSFTPLPSSVGAALELQLHSEKTK
VVELGRRCTELEVKSGTFENVVCVLNREVERFATTMEASNRQHKLDQDKIEALSNKVRQL
ERTVGLKDLTVADMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAMFSPAFYTS
KYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREHII
DAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq 1794 nt   +upstreamnt  +downstreamnt
atggccacacaggagccgtcccccccctcctccatggagagcaataaacccggcttcccc
aagaagatcctgggcaacaagctggaggacaagcacctgtgcaactgctgccacaacatc
ctgcgacggccctttcaagcccagtgtggacatcgcttctgttcctactgcttcaacagg
actgtcagtaatggaccccagaagtgcagtgcctgtattaaagaggatatttttgaagaa
cctacatcgcttttgaaacaaggatgtgcttttcctgacaacgcagttcggagggaggtc
gaaaacctttcagctgtttgtatccatgaaaattgcacttggaaaggcagcattaaagac
tatgagctgaaccacgaggggaagtgtgagttcatgatcctcccctgcccctcctgtaaa
gaacgaatccgcttcaatgaacaggagcgccataatgagcgagagtgtccggagagaaca
ctcaactgcaagtactgcaaggagccatttcacttcaaaaacatcaaggcacatgatgag
atctgtcccaagtacccgatgatctgtgaaggctgtgccaagaagaaaatacccagagag
aagtacgtggaccacattaagttctgcagcaaattcagaacaccgtgtcgatttcatgtc
gtgggatgtgatatgtctgtggaaaaggaaaagattcatgaccatgagcgcacctatgcc
tacgagcacctcaacctgctgctgcactacattatgggcatgaaggtgagcatggagggc
ctgcagccccagggactggaagtagctggacacaagctgctggagctccaacagtccctc
agggagctggaggccagagtctcccagctcagcaccacctcctctgggcctcccgtgcag
ggagcagccactgcctccacctcatcctccagctccggcccccctggtccacccacttta
gctcctctccctccccctcccaccctggctcccactctctccgtctctacctccttcacc
cccctgcccagctcggtgggtgcggcgctggagctccagctccacagcgagaagaccaaa
gtggtggagctgggtcgcaggtgtacggagctcgaggttaaatccggcacgtttgaaaat
gtggtgtgtgtcctgaacagagaggtggagcggtttgccaccaccatggaggccagcaac
cgtcagcacaaactggaccaggacaagatcgaggctctgagtaacaaggtgcgacagctg
gagaggacggtggggctgaaggacctcacggtggctgacatggagggccggctgagggaa
atgtctgccacaacctttgatggcgtcttcgtctggaggatctctgatttcgccaaaaag
agacaagatgccatcgccggtcgagcccctgctatgttttcaccagccttttacaccagt
aagtacggatataagatgtgtctgcggatctatctgaatggagatgggacggggcgtggc
agccacttgtccctgttctttgtggtgatgaggggactgagtgacgctctgctcaaatgg
cctttcaaccagaaggtgactctgatgctgctggaccagagcaacagggagcacatcatc
gacgcctttcgccccgatgtcacttcatcttccttccagcgaccggtgagcgagatgaac
atcgccagcggctgtccgctcttctgcccgctctccaagctcgatgccaagaattcctac
atccgcgacgacaccatcttcatcaaggccatcgtggacctcaccggcctctag

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