Pseudochaenichthys georgianus (South Georgia icefish): 117458764
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Entry
117458764 CDS
T09629
Symbol
trpc6a
Name
(RefSeq) short transient receptor potential channel 6a
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117458764 (trpc6a)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117458764 (trpc6a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank_4
Ank
Ank_5
YVC1_C
DUF3837
Motif
Other DBs
NCBI-GeneID:
117458764
NCBI-ProteinID:
XP_033955312
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All DBs
Position
14:complement(19541476..19552352)
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AA seq
900 aa
AA seq
DB search
MNQDPPLWISSRMNHRPPLISRPAVCSDSPRVRSRDNLLVCEDFGEENCCSGRCLGHSSS
ERQLVAPLGAVKRRQALRGPTYMFSAPSISPSEVEQRFLEAAEYGNIPEVRRMMLHLPHL
NVNAVDYMGQNALQLAVSNEHLEVTELLLGRADLARVGDALLLAISKGYVRITEALLCHP
AFRDAHRLTGSPAQADMLDDFYAYDEDGTRFSHDVTPVILAAHCQEYEIVHTLLSKGAHI
DHPHDYFCGCDSCNYQQQFDSFSHSRSRINAYRGLASPAYLSLSNEDPVLAALELSSELA
MLANIEKEFKNDYCCLSTQCKDYVVGLLDLCRSTEEVEAILSGETDSEDNYDLPGRPSLT
RLKLAIKYELKKFVAHPNCQQQLLSIWYENLPGLRQQTTATKLLVVLAVAIGLPGLAVAY
LVAPCSRVGKVMRSPFMKFVAHASSFTIFLGLLIMNAADRFAGATLLANMTHHDLQGEHN
LNSDPLMLYRMTTSPFTWMEILIISWVMGMIWTEVKEIWSQGPGEYFVEPWNFLDFGMLA
IFLASFSCRLSTLRHADLAQTYVHTHYTTLINVTLPPEINYFTLARIYWVPSDPQLVSEG
LYAVAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFILVFLAFMIGMFNLYS
YYLGAKQNDAFTTLEESFKTLFWAIFGLSEVKSVVINNGHKFIENIGYVLYGVYNVTMVI
VLLNMLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSMLGLA
TGIKSLLQLLWQYVAGHSEEKNETQLNQLGEVKSSGFDGSTSSSRYQKIMKRLIKRYIIK
AQADKESDEITEGELKEIKQDISSLRYELLEEKSQNTETLEGLLRRLAEISTPSATLPVS
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaccctccactgtggatctcctccaggatgaaccacagaccgcccctcatc
agccggccggcggtctgcagcgacagcccccgggtccgcagccgggataacctgctggtg
tgcgaggacttcggagaggaaaactgttgctctggacgatgccttggccacagcagctca
gagagacagctcgtggcccctctcggtgcagtgaaacgacgccaggcgcttcgtggtccc
acctacatgttctctgctccctccatcagcccgtcagaggttgagcagcgcttcctggag
gcggctgagtacggcaacataccagaggtgcggcgcatgatgctccacctgccacacttg
aacgtcaacgctgtggactacatgggccagaatgcattgcagctggctgtgtccaacgaa
catctggaggtgacggagctgctgctggggagggcggatctggccagagtgggtgacgcc
ctcctgttagccatcagtaaaggttatgttcgtatcacagaggccttgttgtgtcaccct
gcgtttagagatgcccatcgtctgacagggagccccgctcaagcagacatgttggacgac
ttctacgcttacgatgaggacgggacgaggttctctcatgacgttactccagtgatcctt
gcagcacactgccaagagtatgagattgttcacaccctgctgagtaaaggggctcacatc
gatcatcctcacgattacttctgcggctgcgactcctgtaactaccagcagcagtttgac
tccttcagtcactcgcgatcgcggatcaatgcctacagaggcctcgccagccctgcctac
ctctccctgtccaacgaggacccagtactggccgccctggagctcagcagcgaactggcc
atgctggctaatattgagaaagaattcaagaacgactactgttgtctgtccacccagtgt
aaggactatgtggtcggcctcctggatctgtgccgcagcactgaggaggtggaggccata
ctgagcggagaaactgactctgaagacaactacgatctaccaggtcgcccctccctcaca
cggctcaaattagccatcaaatacgaactcaaaaagtttgtggctcatcctaactgccag
cagcagctgctgagtatctggtatgagaatctgcccggcctgagacaacaaaccactgcc
accaaactgctggtggtgctggccgtggcgataggactgcctggactggctgtggcttac
ctggtcgctccgtgcagcagagtggggaaagtgatgcgtagccccttcatgaaatttgtg
gcccacgcctcatcttttactatttttctgggtcttctgatcatgaacgctgctgaccgt
ttcgcaggcgccaccctgttggcaaatatgacccaccatgatctccaaggagaacacaat
cttaactctgacccgctgatgctctaccgcatgaccacctcacccttcacatggatggag
atcctcatcatttcatgggtcatgggtatgatctggactgaggtgaaggagatctggagt
caaggcccaggggagtatttcgttgaaccgtggaacttcctggactttgggatgctggca
atcttcctcgcctccttcagctgccgcttatccaccctgagacacgctgacttagcccag
acctatgtacacacacactacacgacactgattaatgtcacactgccccccgagataaac
tactttacactggcacgtatatactgggtgccttcggatccccagctggtatcggagggt
ctgtacgcggtggccgtggtgctgagcttctctcgcatcgcttacatcctaccggccaat
gagagcttcggtccactgcagatctctctggggaggactgtcaaggacatcttcaagttc
atggtcatcttcatcctggtctttctggcgttcatgattggcatgttcaatctgtactcc
tattaccttggggcaaagcagaatgatgccttcaccaccctggaggagagtttcaagaca
ttgttctgggctatttttggactgtctgaggtcaaatctgtcgtgatcaataacgggcac
aaattcatcgagaacattggttacgtgctgtacggggtttacaacgttaccatggtgata
gtactgctcaacatgctcatcgccatgatcaacagctccttccaggagatcgaggatgat
gctgatgttgagtggaagtttgctcgggccaaactctggttctcttactttgaggaggga
aggacgctcccagtacctttcaacctggtccccagtccaaagtccatgctgggactggct
acaggcatcaagtccctgctgcagctgctctggcagtatgtggcaggacacagtgaggag
aaaaatgagacacagttaaatcagctcggagaagtaaaaagttctggatttgatgggtca
actagctcatccagatatcagaagatcatgaagcgtctaataaagcgttatatcatcaaa
gcccaagcagacaaagagagtgacgagatcactgaaggcgagcttaaagagatcaagcag
gacatctccagtctgcggtacgagctgctggaggagaaatctcaaaacacagagacactg
gaaggtctgctgaggaggctcgcagagatcagcacaccttcagcaacactgccagtatcc
tag
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