Pseudochaenichthys georgianus (South Georgia icefish): 117459597
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Entry
117459597 CDS
T09629
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117459597 (slit1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117459597 (slit1a)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Axon guidance molecules
117459597 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
hEGF
LRRNT
Laminin_G_1
LRR_1
LRR_9
LRRCT
EGF_TEN
LRR_14
LRR_EndoS
EGF_DL_JAG
EGF_3
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
117459597
NCBI-ProteinID:
XP_033956415
LinkDB
All DBs
Position
15:23867494..23954778
Genome browser
AA seq
1546 aa
AA seq
DB search
MPVRGSCFGAGMGRLALWMWVGMLCALLVGHSSACPALCTCSGTTVDCHGLGLKTMPRNI
PRTSERLELNGNNLTRITKSDFAGLKYIRVLQLMENQITVIERGAFDDMKELERLRLNRN
QLQQLPELLFQKNPALSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHIACIEDGAFRA
LRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLSWLAQWLRQRPTIGLF
TQCTGPTELRGLNVAEVQKHEFSCSGHQESSGPQPCSIGGGSCPAMCTCSNNIVDCRGKG
LTAIPANLPDTMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRSL
NSLVLYGNKITDLPKGVFDGLYALQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNKIQT
VAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKRIGQ
IKSKKFRCSAKEQYFIPGTEDTRLNNACNSDPVCPPKCRCESNVVDCSNLKLTKIPEHIP
SSTSELRLNNNEITTLEATGVFKNLSQLKKINLSNNKITEVEDGSFEGASSVNELHLTAN
QIDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNQLTTINPGAFDT
LQTLSTLNLLANSFNCDCRLGWLGDWLRTRKIVTGNPRCQRPAFLKEIPLQDVALPDFRC
EEGQEESSSCVPRPQCPSECTCLETVVRCSNKHLHTLPKGIPRNVTELYLDGNQFSVLPK
ELSAFKYLQLVDLSNNKISSLTNSSFANMSQLTTLILSYNSLRCIPKMSFSGLRSLRLLS
LHGNEISELPDGIFNDVASLSHLAIGANPLHCDCRLRWLSDWVKTSYKEPGIARCAGPLG
MEGKLLLTTPAKKFECTGDADTTVLSKCNPCVSSPCLNQGICHSDMVEVYRCSCPPGFKG
KNCESALNACVSNPCANGGTCQVVEEAEGVYSCTCPLGFEGPVCQTNIDNCNDNDCENGA
TCLDGINNYTCFCPPYYTGEMCEEMEDVCAPGLSPCQHQSTCLITSSGPKCVCSPGYVGD
DCSVDYNDCEEHRCQNGAQCVDELNGYSCECLEGYNGQLCEVAQSPLSLCELADCQNSAK
CVERGGRALCQCPPEFGGPRCEKLVSVNFIDRDSYLLLSDLKNWPQANITLQVSTAEDNG
ILLYNGEDDHIAVELYQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMMNLS
IDGGLPITMDSFGAVRPLNGEAPLYVGGRGPLQNTPPSSAGMPVDVHSGVFRLWQLQNGS
SFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKIYCVHGICQPDGAQGPVCHCQPGW
SGLQCDEPVLNPCQGSKCVHGKCIPLDTQSYRCECEEGYRGALCNQQGELFNPCRRLTCK
HGRCQISETGVAFCHCESGYTGELCDAETECRGEPVRDFYQVQRGYAICQTTRMVSWVEC
SGACDTGACCTSQRMKRRKYTFECSDGTSFSEEVEKTIKCGCSGCM
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcagaggtagctgctttggggcaggcatgggacggcttgccctctggatgtgg
gtagggatgctctgcgctctgctcgtgggccacagcagcgcctgcccagccctgtgtacc
tgcagcggcaccacagtggactgccatggactgggtctcaaaaccatgccaaggaatatc
ccccgcaccagtgagagactggagctgaatgggaataacctcacacgcatcaccaagagt
gacttcgctggactcaagtacatccgagttctgcagctgatggagaatcagattactgtg
atcgagcgtggagcttttgatgacatgaaggagctggagagactgcggctgaaccgtaat
caactgcagcagcttccagagttgctgtttcagaagaaccctgccctgtctcgactagat
ctgagcgagaacttcatccagtccatccccagaaaagccttcagaggagctacagacatc
aaaaaccttcagctggataaaaaccacatcgcctgcatcgaggatggagccttcagagct
ctgaggggcttggaagtgctaacgctgaacaacaacaacatcagcagcatccccgtctcc
agcttcaaccacatgcccaagctacgaaccttccgtctccactccaacaatctcaactgt
gactgtcacctgtcgtggttggcccagtggctcagacagaggcctacgattggtctattc
acccaatgtactggccctactgagctcagaggactcaatgtggcagaggtacagaaacac
gaattctcctgctcaggtcaccaggagtcttccggccctcagccctgcagcatcggtgga
ggctcttgccccgccatgtgtacctgcagcaacaacatcgtggactgcagagggaaaggt
ctcaccgccatcccagccaacctgcccgacaccatggctgagatacgtctggagcagaat
gggattaagtctgttcctcccggagccttctctccctacaagaagctgcgtaggatagac
ctgagcaacaaccagatctcagagatagctcctgatgccttccagggcctgcgctccctc
aactcccttgtgctgtatggaaataagatcaccgacctgcccaagggggtgtttgacggc
ctctacgccctgcaactgctgttgctgaatgccaataagattcactgcgttcgtgccaac
gccttccaggacctgcagaatctctcgctgctatcactctacgacaataagatccaaact
gttgccaagggcaccttcacttcactacgagctatacagacccttcacctggcccagaat
ccatttatttgtgactgtaatctgaagtggctggcagactacctgcgctccaaccccatc
gagaccagcggcgcccgctgtgccagccctcgccgactcgctaacaagcgcatcggacag
atcaagagcaagaagttccgctgctccgccaaagagcagtacttcatcccaggtacagag
gacacccgtctgaataacgcctgcaacagcgacccagtctgtcctcccaagtgccgctgt
gagtcgaacgtagtggactgctccaacctgaaactcaccaagatccctgagcacatccct
tcatccacctctgaactccgccttaacaacaatgagattacgactctggaggcaactgga
gtttttaagaacctttcccagcttaagaaaattaacctcagcaacaacaagatcacagag
gttgaagatgggtcgtttgaaggggcgtcgtccgtcaatgagcttcacctcacagccaat
cagatcgactcggtccggagcgggatgttccgcggccttgagggattgcgcatgctgatg
ctgaggaacaacaagatcagctgcgtccacaatgacagtttcacagggttgcacaacgtc
cgcctgctgtctctgtacgacaaccagctgaccacgatcaatccaggagcattcgacact
ctgcagactctctccacacttaacctcttggccaactccttcaactgtgactgccggctg
ggctggctcggcgattggctgaggacgaggaagattgtgaccggtaaccctcgctgccag
cgtcctgccttcctgaaggagatccctctgcaggatgtggctctgcctgacttccgctgt
gaggagggacaagaggagtcgtcaagctgtgtgcccagaccccagtgtcccagtgaatgt
acttgcctggagactgttgtccgctgcagtaacaagcacctccacacactgcccaaaggc
atcccaagaaacgtgactgaactgtatctggatggaaaccagttcagtgttttgccaaag
gaactgtctgccttcaaatacctgcagctggtagatctgagcaacaacaagatcagctcc
ctgaccaactcgtcctttgcgaacatgagccaactcaccactctaatcctgagctacaac
tctctgcgttgtatccccaaaatgtccttcagtggactgcgctctctcagactgctgtct
ctccatggcaacgaaatctccgagcttcctgatggcatctttaacgatgtggcctcactt
tcacacttggcaatcggagccaaccccttacactgtgactgtcgcctgcgctggctgtct
gactgggtgaagaccagctataaagagcctggcatcgcccgctgcgctggtcctctgggc
atggagggcaaactgctgctcactacaccggctaagaagtttgaatgtacaggtgatgcg
gacaccacagtgctgtccaagtgtaacccctgtgtgtccagtccctgtctcaaccaaggc
atctgtcacagcgacatggtggaggtctacaggtgcagctgtcctccaggttttaagggt
aagaactgtgagtcagctctgaacgcctgtgtgagtaacccctgtgccaacggaggaacc
tgccaagtggttgaagaggccgagggagtatacagttgcacatgtcctctgggctttgag
ggccccgtttgccaaaccaacattgataactgcaatgacaacgactgtgagaacggagcg
acctgcctcgatggaatcaacaactacacttgtttttgtcccccctactacacaggggag
atgtgtgaagaaatggaggatgtgtgtgcccctggactaagcccctgccaacatcagtct
acctgcctcatcacctccagtgggcccaagtgtgtgtgctctcctggttatgttggtgac
gactgcagtgtagactacaacgactgtgaggagcatcgctgccagaatggagctcagtgt
gtggatgagctgaatggatactcctgtgaatgtcttgaaggatacaatgggcagctgtgt
gaggtcgcccagtctccactgtccctgtgtgagctggctgactgccagaactccgccaag
tgtgttgagcgaggtgggcgggccctctgccagtgtcctcctgagtttggggggccacgc
tgcgagaaacttgtcagcgtcaactttattgacagagactcctacctgctgctgtctgac
ctcaagaactggccacaagctaacatcaccttacaggtgtcaacagctgaggataatggc
atcctgctgtacaatggagaagatgatcatattgctgtggagctctaccaaggtcatgtc
aaagtcagctatgacccaggcagccagccaggacatgccatctacagtactgagactatc
aacgatggccagttccacacagtggagttggtgacctttgaccagatgatgaacctgtcc
attgacgggggtctccctatcacaatggacagctttggggcggtgcggcccctcaacggg
gaggctcctctatacgtggggggtaggggccctctccagaacacacctccctcctctgca
ggcatgccggtggatgtacattcaggcgttttccgtctctggcagctccagaacggctcc
agtttccatggctgtatccagaacctgtacatcaacaatgagctccaggacttcaccaag
acccagatgaagcctggcgtggtccccggctgcgagccctgcaagaaaatctactgcgtg
cacggcatctgccagcctgacggtgctcagggcccggtgtgccattgccagccgggctgg
agcgggctgcagtgtgacgagccggtgctcaacccctgccagggcagcaagtgtgtccat
ggaaagtgcatcccactggacactcagtcgtatcgctgcgagtgtgaggagggttaccgc
ggcgccctgtgcaaccagcagggggagctgttcaacccctgccgacgcctgacctgtaaa
cacggtcgctgccagatctcagaaacaggagtcgccttctgccactgtgagagtggctac
accggggaactctgtgatgcagagactgaatgccgaggggagcctgtgcgagacttctac
caggtccagcgaggctacgccatctgccagacgacacgcatggtctcttgggtggagtgc
tccggagcgtgcgacaccggggcctgctgcaccagccaacgaatgaaacgccggaaatac
acctttgaatgcagcgatggaacctccttcagcgaggaagtggaaaagaccatcaagtgc
ggctgcagtggctgcatgtag
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integrated database retrieval system
