Pseudochaenichthys georgianus (South Georgia icefish): 117460423
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Entry
117460423 CDS
T09629
Symbol
nphs1
Name
(RefSeq) nephrin
KO
K24496
nephrin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117460423 (nphs1)
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
117460423 (nphs1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
C2-set_2
Ig_2
ig
V-set
C2-set_3
C1-set
fn3
Ig_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
Motif
Other DBs
NCBI-GeneID:
117460423
NCBI-ProteinID:
XP_033957712
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All DBs
Position
16:25174855..25281815
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AA seq
1274 aa
AA seq
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MTGEPSVDQEDKKTLLSLGVAQQDCRRSGANGEMDFMSAWIVSPSVLPFLCLILGTHAQQ
AFRTEPRNLTVRMGATAVLRCEVLRASGTVQWVKDGLLLGPQRRLPGFERYSMIGNLKRG
QHHLQIEKTLLEDEASYECQAGRSDSSQAIISSTAWIFMLIPPSQPYLMVDMATPWVAGS
KYTVTCIAPDAKPMADITLYKDGVELTGAQSFTMSGSKDKLLNTHAEVTVTAVSSDNGRQ
LACHAQNPALFRPVETTMTMKVHYPPQPPVILGLEREEVKEGRTLVLECVSHGGNPLATL
QWTKNEEVLSTTWEEDIVARKSSSILFMRIHPTDNQAVLCCESVNMVSSSPLSVSRKITV
LFEPAEVTLLGSFTAIEGQDINMGCYATSSNPPVQIRWWLGYKELNTSGEAMEEGDNGGM
TAMSNMTHRVSREDDGLKLTCEAFNKGTHFSKTQFDILNVYYPPQNVWLDTPPPDVPLRS
GTTVRLVCFSTGGNPTATLTWFKNGRAVHDALRQTSFERGVARELILVLTPSDNMATFRC
DATNKAKKTISAQTKLKVHFLAVSMKISTKQEVQRQGQMLTLECQSGSSNPQPSIRWSLD
TVRLQGVEQPPKRAHFGGVSVQSSLSLNLSSLHHNKRVICQAYTPELAEGANTFFKLNVH
YPPEFSPKQPAQIQVLEDDMAVIPLLLSANPEEVSCIWLHRRETLVKEGSLHFHWSDDNS
LEIKNVTRKHAGVYTVKCTNEEGVNQASIMLDVLYAPSVKAEKDPVLVNLGETADLICVA
DANPIISGMFTWKWLGEGEVEMGLENQQDESGLLTIHDVTRTHAGLYQCSANNDIAPPAT
VEVQLVVQFKPNLQKGAQWTKVASRGDGTTTAEVVCQAEGIPRVDFTWEKKGVRMDFANP
RYEERTVREGSFHTSTVRVVNVSTNLDYAVFSCTARNSLGEDTLHIQLVSTNHPDPPSSF
GQVDVSHDSVTLDWIPSFNGGLRQRFRVRYRWDQSDSFLYVDVFPPGATTFTVTGLQPVT
TYNFSVNALNAMGESAYADNNAVLTITTKERPEGVPTDDDSVSQSASGLPAYLTVVFTVV
FGVLLVFNSVGCFFGLRWKRRRGQTGGRGGSVLDGKKNKEEGGSHSTVSTANKYESREKI
NTAAQRSLLIDSGSETDSHVYESYAAGSSHYYYPSGDYMPPLNPHPEETRRHDVTRLPVD
PHSHLYEDVRDRGLYQDILASTLPSPPSLFDHRLPNQRNESRSKAYPQAAERARDVRQPP
RDSHLPFEQRGELV
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgacaggagagccatctgtagatcaggaagacaaaaagacgctcctgagccttggcgtc
gctcaacaggattgtcgaaggtcaggtgccaatggtgaaatggacttcatgtcagcatgg
attgtgtctccttcagttctaccctttctctgtctcatcttgggcacgcatgcccagcag
gccttcaggactgagcccaggaacctcactgtgcggatgggagccacagctgtgttgagg
tgtgaggtgctgcgggcctcagggactgtgcagtgggtgaaagatggcctcctcctggga
ccacagagaaggctgccaggctttgagcgctacagcatgattggaaacctcaagagagga
cagcatcatctgcagattgagaagaccttgctggaagatgaagcttcatatgaatgtcaa
gcgggacgatctgatagcagtcaagctatcatttccagcacagcatggatcttcatgtta
attcctccctcccagccgtaccttatggtggacatggcaaccccctgggtggcagggtcc
aagtacacggtcacctgtatcgcccctgacgcaaagcccatggctgatatcacactctat
aaagatggagtagagctgacaggtgcacagtctttcaccatgtctggctcaaaggataag
ctcctgaacacgcatgccgaagtaacggtcactgctgtgagctctgacaacgggaggcag
ctggcatgtcatgcacagaaccccgccctcttccggcctgtggagaccacaatgaccatg
aaggtgcactacccacctcagcctccagttattttgggtctagagagagaggaagtcaaa
gagggaagaacgctcgtgttggagtgtgtgtctcatggtggaaaccccctagccactctc
caatggaccaagaatgaagaagttctctcaacaacgtgggaagaggacattgtggcgcgg
aagtccagcagtatcctcttcatgagaatccatccgacagacaaccaggcagtgttgtgc
tgtgaaagcgtcaatatggtgtcttcgtcacctctttctgttagccgcaaaatcactgtg
ctctttgagccggcagaggtgacacttttggggtcgttcacggccatcgaggggcaggac
ataaatatgggctgctacgccacctccagtaatccacctgtccagatccgctggtggctg
ggctacaaggagctcaacacatccggagaagctatggaagagggagacaatggtgggatg
acagccatgtccaacatgacccacagggtctcccgggaggacgacggactgaaactcacc
tgtgaggctttcaacaaggggacacacttctccaagacccagttcgacatactcaatgtc
tactacccccctcaaaatgtatggctcgataccccccctccagatgtccctcttcgttca
ggtaccacggtccgtctcgtctgcttctccactggaggcaatcccactgcgactctgact
tggttcaagaatggaagggcagtccacgatgcactgaggcagacgtcctttgagcggggt
gtggctcgagaactgatcctggttctgacgccaagtgacaacatggccaccttccgctgt
gatgccacaaataaagcaaagaaaaccatttctgcccagactaagctcaaggttcacttc
ctggcagtaagtatgaagatctcaaccaaacaggaggtgcagcgtcagggacagatgcta
actctggagtgccagtctggaagcagcaacccccagcccagcatccgctggagtttggac
acagtcaggttacagggagtggagcagccccccaagagggctcattttggtggtgtgtca
gtgcagagttccctatccctaaacctgagttcactgcatcacaacaagcgtgtcatctgc
caggcctacactccggagctagctgagggggctaacacattctttaaactaaatgtgcat
tacccaccagaattcagccctaagcagccggcgcagattcaggtgttggaggatgacatg
gcagtcatcccattgctgctctcagctaacccggaggaggtctcctgcatttggctgcac
cgcagggagacgctggtcaaagaggggagtctgcacttccactggtcagacgacaactcc
ctggagatcaagaacgtgacaaggaaacatgctggagtttacacggtcaagtgtacaaac
gaggagggcgtcaaccaagcctccatcatgctggatgttctgtatgctcccagtgtcaag
gcagagaaagaccctgtgttagtgaacctgggggaaacagcagacctaatatgtgtggca
gatgccaaccccattatatctggcatgttcacttggaaatggctgggagaaggggaggtg
gagatgggattggagaaccagcaagacgaatctggccttctgaccattcatgatgtgact
cgtactcatgctggtctttaccagtgctcagccaataacgacatagcaccccccgccact
gtagaagtgcagctggtagtacaattcaaacctaatcttcagaaaggagcccaatggacg
aaggtagcaagtagaggcgatggcaccacaacggctgaggtagtgtgtcaggccgaaggg
attcctcgcgtcgacttcacttgggaaaaaaaaggtgttcgcatggactttgccaacccg
aggtatgaggagcggaccgtgagggagggctcctttcacaccagcacggttagagttgta
aatgtgagcacgaatctggactacgctgtcttcagctgcacggctcgcaactcgctcggg
gaagacacgctccacatccagctcgtcagcacaaatcacccagatcctccttcatcgttt
ggccaagtcgacgtctcccacgactcggtcacccttgattggatccccagcttcaacggt
ggtctgcggcaaaggtttcgtgtaagataccgttgggatcagtcagacagttttctgtat
gttgatgtctttcctcccggagctacaaccttcacggtcaccggcctgcagcctgtcacc
acctacaacttctctgtcaatgccctcaatgcaatgggagagagtgcctatgctgacaat
aatgcagtactgaccatcaccaccaaggagaggccagaaggagtcccaacagatgatgac
tcagtctcacagagtgcaagtggcctgcccgcctacttgacagtagtgttcaccgtggtg
tttggagtcctgctggtgtttaattcagtgggttgcttctttggtttgaggtggaaaagg
aggcgaggccagacagggggtagaggaggcagtgtgcttgatggaaagaagaataaagag
gaggggggtagtcattcaactgtaagcaccgccaataagtatgagagcagagagaagatc
aacacggcagcccagcgcagcctcctcatcgactccggatctgaaacagacagccacgtc
tacgagagctacgcagcgggaagttcccattattattaccccagcggtgactacatgcct
cctctgaaccctcaccctgaggaaacacgcaggcacgatgtcacccgcctccctgtggac
cctcacagccatctgtatgaagacgtaagagacaggggtctgtaccaggacatcctggct
tccacacttccttcccctccatccttgttcgaccacagactgcctaatcagaggaatgag
tcgagatcaaaagcataccctcaggctgctgaaagagcgagggatgttcgacaaccgccg
agagattctcatcttccctttgagcaacgaggcgaattagtctag
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