Pseudochaenichthys georgianus (South Georgia icefish): 117463949
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Entry
117463949 CDS
T09629
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010
MAPK signaling pathway
pgeo04120
Ubiquitin mediated proteolysis
pgeo04140
Autophagy - animal
pgeo04144
Endocytosis
pgeo04620
Toll-like receptor signaling pathway
pgeo04621
NOD-like receptor signaling pathway
pgeo04622
RIG-I-like receptor signaling pathway
pgeo05132
Salmonella infection
pgeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117463949 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117463949 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117463949 (traf6)
04140 Autophagy - animal
117463949 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117463949 (traf6)
04621 NOD-like receptor signaling pathway
117463949 (traf6)
04622 RIG-I-like receptor signaling pathway
117463949 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117463949 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
117463949 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117463949 (traf6)
04121 Ubiquitin system [BR:
pgeo04121
]
117463949 (traf6)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117463949 (traf6)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
117463949 (traf6)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117463949 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
TRAF6_Z2
TRAF3_RING
RING_XB3-XBAT31
U-box
zf-RING_11
Prok-RING_4
Sina_ZnF
zf_UBZ
zf-TRAF_2
DM
Motif
Other DBs
NCBI-GeneID:
117463949
NCBI-ProteinID:
XP_033962367
LinkDB
All DBs
Position
3:21436154..21444362
Genome browser
AA seq
571 aa
AA seq
DB search
MACFGSNKGSLEEDSYDGPVGGELSDCALAMLEKQRESLPSPSESPGSSSISASLQAAAP
IQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDAGQRCPVDNARL
SEDQLFPDNFAKREILSLMVRCQNSGCANRMELRHLEKHMAKCEFATVPCPQCQQSVRQS
QIEEHTTVECTRRPVSCPDCLLCFVHEERELHEQQCPFASVKCQYCEMDLLRNQIESHCD
ADCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSLWT
LGPSVSSENLGAGAAAAASACSGPRGAASCSSNCGPSPPTEEVQKLRDLDGRLVRQDHRL
RELVIFKETQSGHIAELRRRVLSLEEMVKELESQQCHGVFIWRLRGFSALLRNQEASLPV
VEHSPGFYTGRPGYKLCLRLHLQAPNAPRCSNYISLFVHTMQGAFDGQLTWPFQGTIRLT
ILDQGPEGQHHMEVMETKPDLQAFQKPTIQRNPKGFGYVTFLHLHQLSQRAYVKDDTLLI
RCEVTPRFDNVIHREGPAVQPRGPEATISRD
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcctgctttggaagcaataagggaagtttggaggaggacagctatgatggacctgtt
ggtggagagctgtccgactgtgcgttggcaatgctggaaaagcagcgagaatccctcccc
agcccatcagagagccctggcagcagcagcatctctgcaagtcttcaggccgctgccccc
atccagggctatgatgtggagtttgacccacccttagagagtaaatacgagtgccctatt
tgcctcatggctttaaggaatgccattcaaacaccctgtggtcaccgtttctgcaagaac
tgcattgagaagtctattcgtgatgcaggacagaggtgccctgtggacaatgcaagactg
tcagaagaccagttgttcccggataactttgccaagcgggagattctgtcgctaatggtt
cgctgtcaaaactctggctgtgctaacagaatggagctccgacatttggagaaacatatg
gcgaagtgtgagtttgccacagtgccctgcccgcagtgccagcagtctgtgagacagagc
cagatcgaggagcacacgactgtggagtgcacgaggaggcctgtgtcatgcccagattgt
ctgttgtgctttgttcacgaggagagagagcttcatgagcagcagtgtccctttgccagt
gtgaagtgccagtactgtgagatggatctcctcagaaaccagattgaatctcattgtgat
gcagattgcccgaaggcacccatcgcctgtaactttagcacctttggatgtaaggaaagg
atgcagcgacacaacctggctcagcacatgcaggagttcactcagatgcacatgcgctac
atggccgagttcctgcgtggcctcagcctcaatggcaccacacccaaatccctgtggacg
ctaggaccatctgtttcctccgagaatctgggagcaggagccgcagcagcagcctcagcc
tgcagcgggccccgaggagccgcaagctgcagcagcaactgtggccccagtccgcctact
gaggaggtccagaagctcagggacttggatggacgattggtaaggcaggatcaccgactg
cgggagctcgtcatctttaaagaaacacagtccggtcacattgcagagctcaggcgcaga
gtgttgtcgctggaggagatggtgaaggagctggaatcgcagcagtgtcacggtgtcttc
atctggcgccttagaggtttctccgccctcctgcggaaccaagaagcaagcctgcccgtg
gtggagcacagccccggcttctacaccggtcgccccggctacaaattgtgcctgcgccta
cacctgcaggcccccaacgccccgcgctgctccaactacatctccctcttcgtccacacc
atgcaaggagcttttgacgggcagctgacgtggccgttccagggaaccatccgcctcacc
atcctggaccagggcccagagggtcagcaccacatggaggtgatggagactaaacctgac
ctgcaagccttccagaagcccaccatccagcgcaaccccaaaggattcggctacgtcacc
tttctgcacctgcatcagctgagtcagagagcctatgttaaagatgacactctgctcatc
cgctgtgaggtcacaccgcgttttgacaatgtgattcaccgcgagggcccagcggtgcag
cctagaggaccagaggccaccatttcgagagactaa
DBGET
integrated database retrieval system
