Pseudochaenichthys georgianus (South Georgia icefish): 117464568
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Entry
117464568 CDS
T09629
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117464568 (scn4aa)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117464568 (scn4aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Lustrin_cystein
DUF1492
IQ
Motif
Other DBs
NCBI-GeneID:
117464568
NCBI-ProteinID:
XP_033962982
LinkDB
All DBs
Position
19:complement(10954667..10990887)
Genome browser
AA seq
1773 aa
AA seq
DB search
MLTIVLNCAFMTLSNPPAWSKTVEYVFTGIYTVEATIKVLSRGFCAGSFTFLRDPWNWLD
FMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQSVKKMVDVMILT
VFALAVFALIGLQLFMGNLRQKCVRWPIETNETAYDLFNTTAQFNDTMFFNNIMGVNNTS
YSNSTFNFNEYIENTDNQYYLEGSLDALLCGNSSDAGKCPEGYTCMKAGRNPNYGYTSFD
SFGWAFLALFRLMTQDYWENLFQLILRAAGKTYMLFFVVIIFLGSFYLINLILAVVAMAY
EEQNQASQREAIEKEEEFQRLLEQIRNQDEQAMGLGSQVSLTSKKSLSHHTISEVADDEQ
SLEHDEIIKDCSGRIIPRLLVRAPTLVKDASVYELEGKSLGSDHSMLRLEEPRLTQRAAS
PLSVLTAAALEELEEAQRPCPPGWYKFADTFLKWDCSPRWILMKKWVLFIVMDPFVDLGI
TICIVLNTLFMAMEHYPMTPQFDHMLSVGNLVFTGIFTAEMFFKLIAMDPYYYFQVGWNI
FDSIIVTFSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLT
LVLAIIVFIFAVVGMQLFGKNYKECVCKISTECELPRWHMNDFFHSFLIVFRILCGEWIE
TMWDCMEVAGTGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSTEEDGEMNNLQIA
IGRITRGIDWFKAFLVRSILHIINKKPKDNEDGSNEDEDPKTEGIEMNHFDSSQHFKMAD
GIPNCLVECGPSGLIVDGGFSLNVPIAQGESDFENMDEDDTDDVDDTEDVDDADDSEFSD
EEHNPHYSEKYKDVHCLLGHIKLMGALNDGDSSVCSTVDYQPPEPEPEKVEEEDPDPVEP
EACFTDGCIKRWPCLTVDITQGRGKKWWNLRRACFTIVEHDWFETFIIFMILLSSGALAF
EDIYIERRRTIKIILEYADKIFTYVFIIEMLLKWVAYGFKTYFTNAWCWLDFFIVDISLI
SLAASFMGFSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIF
WLIFSIMGVNLFAGKFYRCINTTTSELFPMWEVNNHSDCLLLQEATQEARWVNVKVNYDN
VGQGYLSLLQVSTFKGWMDIMYAAVDSREVEEQPSYEINLYMYIYFVIFIIFGSFFTLNL
FIGVIIDNFNQQKKKFGDKDIFLTEEQKKYYEAMKKLGSKKPQKPIPRPTNPIQGLVFDF
ISQQFFDIFIMVLICLNMVTMMVETDNQSAEKEDFLFKVNVAFIVVFTGECSLKLIALRQ
YFFTNGWNVFDFVVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIR
TLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKEAGIDDIFNFETFGGSIICL
FEITTSAGWDRLLLPMLDKEFPDCDPNFENPGTDVKGNCGNPLMSMAFFCSYIIVSFLVV
VNMYIAIILENFNVAQEESGDALCEDDFEMFNETWEKFDLDGTQFIEYSQLSDFCDTLQP
PLKVAKPNRIPLMTMDLPLVIGDRIHCLDVLMAVTQMVLGETLEMAAMRESIQAKFVLSN
PTSDSFAPITTTVRHKEEEMAAVVVQRAYRKHLLKRCTRHAAFMQRCKRKGQKDEGDDPP
EKEGMLARRMGVLYGSKLDLAEEMEQADIETLANQQPSNPETLSDDTESQSDTESPEPNV
IVVLVEITNEVLLHSAPDPYLFYLHANLKETIV
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atgcttacgattgtattgaattgtgcattcatgacgttgagcaacccaccagcatggagt
aaaactgttgagtatgtttttactggaatctataccgttgaggcaacaatcaaagtgttg
tcaagaggtttctgtgctggatcttttacattccttcgagatccatggaattggctggat
ttcatggtgatcagcatggcatatgtcactgagtttgttgacctcggcaacgtgtccgca
ctcaggacatttcgtgtacttcgagccctcaaaacaattactgtgattcctggtttgaaa
accattgtggccgctttgatccagtcagtgaagaaaatggtggacgtcatgattctgaca
gtctttgcccttgctgtttttgccctcattggccttcaactctttatgggaaatctacgt
cagaaatgtgtgcgatggcccatcgaaacaaatgaaactgcatatgatctttttaacacc
actgctcaatttaatgacaccatgttcttcaataacatcatgggtgtcaacaatacatca
tattccaacagcaccttcaactttaatgagtacattgaaaacacagataatcagtattat
ttggaaggcagcctagatgctctactttgtggaaacagctcagatgctggaaagtgccca
gaaggatacacatgcatgaaagctgggcggaaccctaactatggctacaccagttttgat
tcgtttggctgggccttcctggccctcttcagactcatgacccaggactactgggagaac
cttttccagctgatcctgcgggcggctgggaagacatacatgctgttctttgtggtgatt
atctttctgggctccttctacctcatcaacctcatcctggctgtggtagccatggcttat
gaagaacagaatcaggcatctcagcgagaggccatcgagaaagaggaagagttccagagg
ctactcgagcaaatcaggaatcaggatgagcaggctatgggtctaggaagccaagtcagt
ttaactagtaagaagtcactcagtcatcacaccatatctgaggtggcagatgacgaacaa
agccttgaacatgatgaaattatcaaggattgtagtgggagaatcattccccgtctgttg
gtccgagcacccactttggtcaaggatgcttcagtttatgagctcgaagggaagtcatta
ggctctgatcacagcatgcttcgtctggaagagccacgcctgacacagagggctgctagc
cctctgagtgtgctcactgcagctgctctggaagagttggaggaggctcagaggccgtgc
ccacccggctggtacaagtttgcagacactttcctgaagtgggactgctccccgcgatgg
attcttatgaaaaaatgggttctctttattgtgatggacccttttgttgacttgggcatt
accatctgcattgtgctcaacaccctcttcatggccatggagcactaccctatgacccca
cagtttgaccacatgctctcagtggggaatctggttttcactgggatcttcacagcggag
atgttcttcaagctcatcgccatggatccttactactactttcaagttggctggaatatt
tttgacagcatcatcgtcacttttagtctggtggagttggggcttgcgaatgtccaaggt
ctgtctgtcctcaggtccttccgtctgcttcgtgtcttcaaactagcaaagtcctggccc
accctcaacatgctgatcaagattattggtaactcagtgggagctttaggaaatctgact
ttggtgctggccatcatcgtcttcatctttgccgtggtgggtatgcagctctttggcaaa
aactacaaggaatgtgtgtgcaagatctccacagagtgcgagctgccacgctggcacatg
aacgacttcttccactcattcctcatcgtgttccgcatcctgtgcggggagtggatcgag
accatgtgggactgcatggaggtggccggaactgggatgtgtttagtcgtcttcatgatg
gtcatggtcattggaaatctagtggtgctgaacctcttcctggccttactgctcagctca
ttcagcggagacaatctctcaacagaggaagacggagagatgaacaatctccagatcgcc
attggcaggatcacacgaggcattgactggttcaaagcgttcctcgttcgatccatcctg
catattatcaataaaaagcccaaggacaatgaggatggttcgaatgaagacgaggaccct
aaaactgagggaattgaaatgaaccactttgactccagtcaacatttcaaaatggctgat
gggatacctaattgtttggttgaatgcgggccttctggattaattgtggatggagggttc
agtctaaatgtgccaattgctcagggagagtcagactttgaaaacatggatgaggatgat
actgatgatgttgatgatactgaagatgttgatgatgctgatgactcagagttttcagat
gaagaacataatccacattattcggaaaaatataaagatgttcattgtttactgggacat
atcaaattgatgggtgctttgaatgatggggattcctcagtgtgtagcacagtggactat
caaccacctgagcctgagccagaaaaagtggaagaggaagatccagaccccgtagagccg
gaagcctgcttcactgacggctgtattaagcgctggccatgtctgactgtggacataacc
cagggtagaggcaaaaaatggtggaacctcaggagggcttgctttactattgtggagcat
gactggtttgaaacctttataatcttcatgatcctcttgagcagcggggctttggcattt
gaagacatatacatagaaagacgccgcaccatcaaaattattctggagtatgctgacaaa
attttcacctacgtctttatcatcgagatgctccttaaatgggtcgcgtacggctttaag
acctacttcaccaatgcctggtgttggttagactttttcattgtagatatttccctgatt
agtttagctgccagctttatgggattctctgaccttggaccaatcaaatccctccggact
ctcagggccctaaggcctcttcgagcgctgtcaagatttgaaggcatgagggtggtggtg
aacgctctcgttggtgctattccctccatcttcaacgtgctgctggtgtgtctgatcttc
tggctcatattcagcatcatgggagttaacctgtttgctgggaagttctaccgctgcatt
aataccaccacgtctgaacttttccccatgtgggaggtcaataaccatagcgactgcttg
ctcctccaagaggcaacgcaggaggcccgctgggtcaacgtcaaggtcaactatgacaat
gtgggacaaggctacctgtcactgcttcaagtgtcaacttttaaaggctggatggacatc
atgtatgctgctgttgactcaagagaggtagaggagcagccttcttatgagatcaacctc
tacatgtacatttactttgtcatcttcatcatctttggctctttcttcacactcaacctc
tttattggtgtcattattgacaatttcaaccaacaaaagaaaaagtttggagataaagac
atctttctgactgaggagcaaaaaaagtactatgaggccatgaagaaacttggttccaag
aaaccgcagaagccaattccacgtccaacgaacccaatccagggattggtgtttgacttc
attagccagcaattctttgacatcttcatcatggtgctcatctgcctcaacatggtgacg
atgatggtggagacggacaaccaaagtgcagagaaggaagatttcctttttaaagtaaac
gtggctttcattgtcgtgttcaccggagagtgttcgttgaagctcattgccctgcgacaa
tacttcttcacaaacggatggaacgtttttgactttgttgtggtcatcttgtcaatagcc
ggtacaatgctctcagacatcattgagaagtattttgtgtcaccaactctgttcagagtc
atcagactggccagaataggcaggattctgcgtcttatcaaaggagccaagggcattcgg
acgcttctctttgccctaatgatgtcacttcccgccctattcaacattggcctcttgctc
ttcctcattatgttcatcttctccatatttggcatgtcaaactttgcctatgtcaaaaag
gaagctggaatcgacgatatatttaattttgagacgtttggtggcagtattatctgcttg
tttgagatcacgacctccgccggctgggatagacttttacttccaatgctggataaggag
ttcccagattgcgatccaaattttgagaacccaggcacggatgtaaagggcaactgtggc
aatccgctcatgagcatggcattcttctgcagctacatcatcgtctcattcttagtggtg
gtcaacatgtacatcgccatcatcttggagaacttcaacgtggcgcaggaggagagcgga
gatgcactctgtgaggacgattttgagatgttcaatgaaacttgggaaaagtttgacttg
gacggaactcagttcattgagtatagccagctctcagatttctgtgataccttgcagccg
ccactgaaggttgccaagcccaaccgaattcccttaatgacaatggatctgcccctggtc
atcggggacaggatccactgcctggatgtcctgatggccgtcacacagatggtcttggga
gagacgctggagatggcggcgatgcgggaaagcattcaggccaagttcgtcctcagcaac
ccaacctcagactcctttgcgccaattaccacaacggtgcgccacaaagaagaggagatg
gccgctgtggtcgttcagagggcttaccgcaaacacctgctgaaacgctgcacgcgccat
gccgcttttatgcagcgatgtaagaggaagggtcaaaaggacgaaggtgacgatcctcca
gagaaagagggaatgctcgcacgaaggatgggggtgctctatggtagcaaattggacctt
gcagaggagatggagcaggctgatatagaaactctagcaaaccaacagccttctaatcca
gagacactttcagatgacacagagtcccaaagtgacacagaatcccccgagccaaatgta
attgttgtacttgtagaaataacaaatgaggttttattacattctgcccctgacccatac
ctcttttacctacatgcaaatctgaaagagacaattgtatga
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integrated database retrieval system
