Pseudochaenichthys georgianus (South Georgia icefish): 117464591
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Entry
117464591 CDS
T09629
Name
(RefSeq) protocadherin-15-like
KO
K16500
protocadherin-15
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
117464591
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pgeo03037
]
117464591
04515 Cell adhesion molecules [BR:
pgeo04515
]
117464591
Cilium and associated proteins [BR:
pgeo03037
]
Primary cilia and associated proteins
USH complex and associated proteins
117464591
Cell adhesion molecules [BR:
pgeo04515
]
Cadherins
Protocadherins
117464591
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Ig_Cad99C_N
Ig_CLSTN
Cadherin_CELSR2_9th
Cadherin_2
CDH23_a-b
Fibulin_C
RET_CLD1
Cadherin_4
Big_9
Ig_BT4661_1st
DUF7807
Motif
Other DBs
NCBI-GeneID:
117464591
NCBI-ProteinID:
XP_071062903
LinkDB
All DBs
Position
19:complement(19214769..19442886)
Genome browser
AA seq
1824 aa
AA seq
DB search
MVVKMVRTHLMGPLSWGRVKWPSIMGTGVLYLLLLSTCLGQDTEDWQYEECKLSRSGPPA
TIVAIDEESPNGTLLVENMQINGMAEGPDRTISLSLRDNHEHWVILDQSKQALYLNSTGR
VLDRDPPSYIHSIVVQVQCTNELVGTVILHEVRIVVRDRNDNAPHFQQPRYYVAVSELTP
VGTTIFSGFYGNNGAADIDDGPNGQIEYTIQYNPRDPTTNRTFDIPLTLFGSVVLRERLN
YEEITRYMVIIQANDRAPYPSERRTATTTLTVDILDGDDLGPMFLPCTLVGNTRDCSPIT
YRAKVLELTEPNKENPVNVTPPIQAVDQDINLQPPSDRPGIIYSILIGKPESYAEYFSLN
ATTAELLLLKPVDRELHRRFDLVIKAEQDNGHPLPAFANLQIEVLDENNQAPYFLETSYH
GYVSEASPVGTTIATTASLSAPLAIVALDNDVEETRDPQLQFSLDSYSNVFSVSATGIRR
YITLVQPLDRETQDSYKFTLLASDGVQQSIPVTVTITVLDANDNTPTFANVSYNVNLFTD
MMSGETVLKLAAVDSDAGPNGQITYRILAGDQGHFVIGNSTGIITVAPTVDLTVGRSYAL
TVEAMDNGPVPQRRSSITTVYIEVLPPNNQSPPHFPRQQYNLEISEAMRTGATLLNLQAV
DRERDPVTYNIYSGDSRGHFALQQNSGYLVLNKSLDRESLDYYTLVVTASDGHPDGTSTA
TVNIVVTDVNDNDPLFDSSLPVNLTVIEEKDHAYVGQVKATDPDLGASGQVNYRLVNHQK
LFSINATGAITTTMPLDREVQSHYLLIVEARDGAVNPRRSRLTLSITVLDVDDNSPVFTQ
QTYNVSVPENSPKDTVILQLKAIDADLGSNLTYKIRAEGSDQEIVRLFHIDPVTGQLSVL
KVLDFEALTESEPTYTFTVEARDAEGTMPPGLASVTVRIMDMNDFSPVFSQSMYRGLVAP
NAVKGTIVTTVMANDSDPAGTPAGVVRYKVNQEAYPYSASIFDVEEKTGRVVTRVNLNEE
PNLKFSLVVVAFDDGEPAKENTTLVEITVLQPSVIPVFTQEEYRFLPVSEETAVGTPVGA
IMAAAVNQTIVYSITDGNQGGMFALNETTGLISTAKHLDYEANSSYILKVEADSMRVVSS
NLRVPSKTNTARVVIDIQDENDHPPLFSRPLYIGGVAEDAKTFTSVLKVQALDKDTGNYS
AMMYRLIIPPPAGKNTKDSKDGFIIEPFSGVVKTAIMYRNMRRSYFKFEVVATDNYGQGH
SSKAEIVVSVVNQLDMQVVVSNVPPTYVEKNKDKLLSILERYVQEQIPGAKVVVETIGPQ
RHGEGMEQEDYTKSDLMIYAIDPLTNRAVSRQELYKFLDGKLLDINKEFQPFLPPGGRIL
EIRTPELVTSVKKAVQTVGYTEGALLALAVIIIVCCVPAIFVVIFTYRQFKERQAECAKT
ARIQMALPTGKPGGGTANNLYEELGDNAMRGYGQHETQQLLRPSLLRPEELSMESGIDPG
QEYYAQDYYNYDHGYELPQYGSRRKLIPPSGLYDEYGEVVVDDDGSYYYSPQESEGEPGN
RKRRIKLVVDREYETSSTGEESLPETQRSRLPPTLNSHSSIYLAQNGSIIRTRRTVNPTC
TTHTHSTTMNNNLKIPSPVFSSRLAKHFKKLDKMAATLEERVPLNNPLSPADSGGNTLRT
FQSSGMIASATATSSFSNTDNNKTLSTFNTRQSSASLESSTSNTGPDSVESKSNLLREAQ
SGRETPQGPGGREELGEGGREELGEGGREELGEGERETQVDVCSDDAGLVVGELLECPSD
RTLSDEEELWMGPWNSLHIPMTKL
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgaagatggttagaacacacttaatggggccactgtcatggggccgggtcaaa
tggccgagcataatgggaacaggagtcctttatctgctgctgctatcaacctgtctcgga
caagacacggaagactggcagtatgaggaatgtaagctttctcgatcggggcctcctgct
accattgttgccattgacgaagaaagccccaacggaacgttattggttgagaacatgcag
ataaatggcatggctgagggtccggatcgtaccatctctctgtcgctgagggataaccac
gagcactgggtgatccttgaccaatccaaacaagccctttacctcaacagcaccggacgg
gttcttgacagagatcccccctcgtatattcactccattgtggttcaggttcagtgtacc
aacgagctggtcggcacggtgattttacacgaagtccgcatcgttgttcgagaccgcaac
gacaacgcgccacatttccaacagccgagatactatgttgccgtcagtgagctgacgcca
gtaggaaccactatcttctctggtttctatgggaacaatggggcagcagacattgatgac
ggtcccaacggacagatagagtacaccatccagtacaaccccagagacccgacaacaaac
aggacctttgacatccccctcacactttttggatccgtagtcctcagagaaagactcaac
tatgaggagatcacacgctacatggtcatcatacaggcaaatgaccgagccccctatccc
agtgagcgccgtacggccaccaccactctgactgtggacatactggatggtgatgacctg
ggtcccatgttcctcccatgtacgcttgtgggaaacacccgtgactgcagtcccatcacg
tacagggctaaagtcctggagctgacagagccgaacaaggaaaatcctgtcaatgtgact
ccacccattcaagctgtggaccaagacataaacctgcagcctccctccgaccggcccggg
attatttactccattctcatcggcaaaccagagtcctatgcggaatatttcagcttgaac
gcaaccaccgcggagctcctgctactaaagcccgtcgatagggaactccaccgcagattt
gatttggttatcaaggcagagcaggacaacggccacccattgccagctttcgccaacctt
caaatagaagttctggatgaaaacaaccaggcaccctatttcctggagaccagttaccat
ggctatgtcagtgaggcatcacccgtgggaaccaccatagcgacaactgccagtctctct
gcaccgctggccatcgtggctctggataacgatgtggaggagaccagggaccctcagctc
cagttctcattggacagctattctaatgttttctctgtgtctgctactggaatcagacga
tatatcaccctggtgcagccactggacagagagacacaggactcctataaattcacgctt
ttagcatcagatggcgtccagcagagcatccctgttaccgtgacgattaccgtgttggat
gccaacgacaacactcccacttttgctaatgtctcctataatgtcaacctgttcactgat
atgatgtctggagaaactgtgttgaagctcgcagcagttgactccgatgcaggtcccaac
ggtcagatcacttaccggatcttagctggagaccagggacattttgttattggcaacagc
actggaatcattactgtggcaccaaccgttgatctcactgttgggcggagctacgctttg
actgtagaagccatggacaatgggcctgtacctcagagaaggtcatccattaccacggtc
tacatcgaagttttgcccccgaacaatcagagccctccccatttcccccgacaacagtac
aacctggagatcagtgaagctatgaggactggagctacactactcaatctgcaggcagtg
gatcgggagagggaccctgtcacctataacatttacagtggagactctcgtggacatttt
gctttacagcagaattcagggtatctggtgctaaacaagtctctggacagggagtctctg
gattattataccctggtggtcacagcctcagacggacacccagatgggacctccacggca
acagtgaacattgtggtgacagatgttaatgacaacgacccgctgttcgattcttcactg
ccggtgaacctcactgtcatcgaggaaaaagatcacgcctacgttggacaggtcaaggct
acggacccagatctgggggcaagcggtcaggtcaattatcggctcgtcaaccaccagaag
ctgttttccatcaacgccaccggagcgatcacaaccacgatgcccctggacagagaggtt
caaagtcactacctcctgatcgttgaagcgcgggatggtgcagtgaatcctcgtagatcc
aggttaacactgtccatcaccgtcctggatgtagatgacaacagccccgtattcacacaa
caaacctacaatgtcagcgtgccagagaacagccccaaagacacagtcatattacagtta
aaggcaatagacgctgacctcggctccaacctcacatataaaatcagagctgaaggctcg
gaccaggagatcgttcggctgttccacattgacccggtgacagggcagctgtctgttctc
aaagttcttgactttgaggccctgactgaatcagaacccacgtacactttcacagtagag
gccagggatgcagagggaaccatgcctccaggactagcctctgttactgtcaggatcatg
gacatgaatgacttttctccggtattcagccagtcaatgtaccgaggcctggttgcccct
aatgccgtcaagggaaccatcgtaaccacggtgatggccaatgactctgaccctgcgggt
accccggcaggtgtagtacgctataaagtgaaccaggaggcctatccatactctgccagt
atatttgatgtagaggaaaagacaggacgcgtggtcaccagagtaaacctcaacgaggag
cccaacctcaagttcagcctagtggtggtggcctttgatgatggtgagccagcaaaggag
aacacaactctggtagagatcacagtcctgcagccctctgtcattcctgtgttcactcag
gaagagtacaggtttctaccagtgagcgaggagactgccgtaggaaccccggtgggagcc
atcatggccgctgctgtcaatcaaactatcgtctactccatcaccgacggcaaccaggga
ggtatgttcgcattaaatgaaacaacaggattgatttcaacagccaagcacctggactac
gaagccaactccagctacatcctgaaggttgaagcagactcaatgagagtggtgtcctcc
aacctcagggtcccctctaagaccaacacagctagagtggtaatcgacatccaggatgag
aacgaccacccgccgcttttctccagacctctttacatcggaggggttgctgaagatgca
aaaacgttcacctccgtgttgaaagtacaggccctcgacaaagacactgggaactacagc
gcgatgatgtaccggctcatcattccccctcccgccggtaaaaacactaaagacagcaaa
gatggcttcatcatcgaacctttcagcggcgtggtgaagacggcaatcatgtaccgcaac
atgaggcggtcatattttaaatttgaggtggttgctacagacaactatggccaaggacac
agcagcaaagcggagatagtggtgtcagtcgttaaccagctggacatgcaggtggtcgta
tcaaatgtccctcccacctatgtggagaaaaacaaagacaagctgctcagcattttggaa
cggtacgtccaggaacagataccgggagcaaaggtagtcgtggaaaccatcgggccccag
cgccatggagaaggaatggagcaggaagactacaccaagtctgacctcatgatttatgcc
atcgacccgctgacaaacagagccgtgtctagacaggagctctacaagtttctggatggt
aaactgttggacatcaataaagagttccagcccttcctccctcctggcgggcggattctg
gagatccgaacccctgaactggtgaccagcgtgaagaaagctgtgcagacggtcggctac
acagagggggcgctgctggctctggccgttatcatcatcgtctgctgcgtccccgccata
tttgtagtcatcttcacttacagacaattcaaggaacgccaggcagagtgtgccaaaaca
gcccgaatccagatggccctgccaacaggcaaacctggcggaggcactgccaacaacctg
tacgaggagcttggtgacaacgccatgcggggatatggacaacatgagactcagcaactt
ctccgaccctctctgctccgaccagaggagttatcgatggagtctggcatcgaccccggc
caggaatactacgcacaagattattacaactatgatcacgggtatgagcttcctcagtac
ggcagtcgcaggaaactgattccaccctccggactatacgatgaatacggagaagtggta
gttgatgacgacggcagctactactacagcccacaggagtctgaaggagagccgggcaac
agaaagcgtcggatcaagttggtggtggaccgggaatatgagaccagctccaccggagag
gaaagcctgccggagacgcagcgcagccgcctcccccccaccctcaacagccacagcagc
atctacttggcccagaacggctccatcatccgcacccgccgcacagtgaaccccacatgt
accacacacacgcacagcaccaccatgaacaacaacctcaaaatcccctcgcccgtcttc
agctcacgactggccaagcactttaaaaaattggacaaaatggccgccacactagaggag
agagttcccctgaacaaccccctatcaccagcggacagcgggggcaacacgctgcgcact
ttccaaagctcggggatgatcgcctcggcaacggccacttcctctttctctaacactgac
aacaataagacgctgagtacgtttaacacccggcaatccagcgcttcgttagaatccagc
acaagcaacacgggccccgacagcgtggagtctaagtcaaacctgctcagagaggctcag
agcggcagggagacgcctcaaggcccgggggggagagaggagctgggggaaggggggaga
gaggagctgggggaaggggggagagaggagctgggagaaggggagagagagacgcaggtg
gacgtctgtagtgacgacgctgggctggttgtgggggagctgctggagtgtccgagtgac
agaacgctgtccgacgaggaggagttgtggatgggcccgtggaacagccttcacataccc
atgactaaactctga
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integrated database retrieval system
