Pseudochaenichthys georgianus (South Georgia icefish): 117465166
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Entry
117465166 CDS
T09629
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03440
Homologous recombination
pgeo03460
Fanconi anemia pathway
pgeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117465166
09124 Replication and repair
03440 Homologous recombination
117465166
03460 Fanconi anemia pathway
117465166
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117465166
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgeo04121
]
117465166
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117465166
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117465166
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117465166
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117465166
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117465166
Multi subunit type E3
BRCC complex
117465166
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117465166
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117465166
BRCA1-A complex
117465166
BRCA1-B complex
117465166
BRCA1-C complex
117465166
BRCA complex
117465166
FA (Fanconi anemia) pathway
Downstream FA components
117465166
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
RTT107_BRCT_5
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
RING_XB3-XBAT31
zf-RING_5
zf-Nse
YicC-like_C
PTCB-BRCT
TRAF3_RING
zf-rbx1
zf-ANAPC11
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
117465166
NCBI-ProteinID:
XP_033963974
LinkDB
All DBs
Position
19:complement(18220948..18244066)
Genome browser
AA seq
1401 aa
AA seq
DB search
METPLAPDVKKGISVLWETLQCPICLELMTAPVSTKCDHQFCKCCMMKLLDSTIPSRASC
PVCKTKITRRSLQESPGFQRLVSGLQSMIQAYENDTGINYFTGMCQEKGKPGVSAAEATK
HCHDNPFEETPDMEENVDNDDLSRSPSSTIAAQNGFARLMGLEDTSPLTTENEGLDSGLG
EAPPMSDKKTHSPPDNVEAIETDISGVVEKPTSRHKTRGKIKASFQPPLITDETKYQPLR
KSLRKKQNTDLDPDKILEEKQKKSLEKVAEWLMKVPTEGSLELEKPNKNSDDSESCSSSS
TINVKQHNIFMNPTREDRAKVLNEQVFGAVYKRDRNKNSSPALHVEPQTTKETQKNSKIN
KRNTFADIVKKTSTEDKYGSDLEEEQQRVDQVIDTSSDIFKEAEKMDVMLEKKQQGKDEV
PCPPSDIKPLQPKRKLMKRTRSSLQQVDIDFLKQAEEHSESTEQKKTDKKKGKNTRSENG
KPVRVPKPLVLVGVQNGETSPMAKPRSEEVQLHIENYPSSEEKAIPVTRSNKRSIRLQLF
AEEVQEGHKKANWRANKAEKESIVGKQSEETKDGELDDMPSPKNKSMTQAAEQNGCIYGD
DLGGIENMESGERPTPNAPYSIVEVPNTDTWSEASSACNVAVVPSSTSPHENTVVPPTLE
RHNPANHLPNNTRLETLMRQTKCAGAENEDDDSELDTEQLLKSFKATKRKSFNLGGSNVK
RTQGFGQENVQVSEEKDSKRVGSGVASVNNQMYTKESEMTNQEALRDNETSSCCDFISPS
ISPSRTRKPVEKAVQVVVEASIPDSGCSGQDSSFSRNNVSSALTPNKVSKRKIESPNLSA
VPRVVDSGLRFTAAEHDELDEPSKYSQITEKQLDAGKGMEIRDVCNANAGGTHSVNTAEH
FINTEFSLTPSGLRDSCGSRELSAHSSLKSKPKKRKRAQRLESSPESVRSEEALPTLTEI
FGTSASRSAVTKDQGDSGEARCEGVTVPGAQQMSRPPASHSPDCVPTSQCSVDLFGTPDG
RDVPVNDVGTSQFESSQFSSEVLVTQQKIEMQNELVRLKKLMALVTKVLQEKEDSPAKED
SSKTDQSSKTTGQDTNRSPLCTKDTGPGSDQEAVQEVEREPSTRPSDGEGVAEPGVSETE
VQRSTHTGPGAKGSGGSKTPSSSPAARPLKSNGSPSDGQEDKENNTPPKDRSKAKMVLAS
SGLAPNEQTMVKKFAKRLGGRVVSQVTPEVTHVIMHTDEQLVCERTLKYFLGIAGRKWVV
SFQWISECFKLKKVLDESAFEVGGDVVNGPDHQGPMRARTTEDSSLLMKGFRFCFQGSFT
DMTTDEMEWMVELCGAAVVKDPLLLDSKQQKSRQLVIVQPGSESSSSTYSSLSKQATVVT
RGWLLDTVATYTLQNYNKYKT
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccctctggcccctgatgtcaaaaaggggatttcagtcctttgggagaccttg
cagtgtcccatatgcttggaattaatgactgcacctgtgtctaccaagtgtgaccatcaa
ttttgcaaatgttgtatgatgaagcttttggacagcaccataccaagcagggctagctgt
ccagtgtgtaaaaccaagataaccagaaggagcttgcaggagagccctgggttccagaga
ctggtttcaggattgcagagcatgattcaggcgtatgaaaatgacacaggcatcaactac
tttactggtatgtgccaggaaaaaggaaaaccaggagtctcggctgctgaagctactaaa
cattgtcatgataatccatttgaagaaacaccagacatggaagaaaatgttgacaatgat
gatctgtcaaggtctccctcttcaactatagcagcccagaatggatttgcacgactgatg
ggacttgaagacacaagtcctttgacgacagaaaacgaaggcctggacagtggtcttgga
gaggccccaccaatgtctgacaagaaaacgcacagccctccagataatgtggaagcaatt
gaaacagacatttcaggcgttgtggaaaagccaacatcaagacacaaaacaagaggtaaa
ataaaagcctcctttcaaccaccattaataacagatgagaccaaataccaacctttaaga
aagtccttaaggaaaaagcagaacacggatttggatcctgacaagattcttgaggagaaa
cagaaaaaaagtctagagaaagtcgctgagtggctcatgaaagttccaactgaaggaagt
ctggagttagagaaacccaacaaaaactcagacgattctgagagctgttcttcatcttca
acaataaatgtcaaacaacataacatctttatgaatcctaccagagaggatcgtgctaaa
gttctcaatgagcaggtgtttggggccgtctacaaacgagacagaaacaagaacagctct
ccagctctacatgtcgaaccacaaacaaccaaagaaacacaaaagaactccaaaataaat
aagaggaacacttttgctgatattgtcaagaaaacaagcaccgaagataaatatggcagc
gatttggaggaagagcaacaacgggtggaccaggttattgataccagtagtgacattttt
aaagaagcagaaaagatggatgtcatgctggaaaagaaacaacagggcaaagatgaggtt
ccttgccctccgtctgatattaaaccactacaaccgaaaagaaagttgatgaaaaggaca
cgcagctctctgcagcaggtcgacatcgatttcctgaagcaagccgaggaacattcagaa
agtaccgagcaaaagaaaactgacaagaagaaaggtaaaaacacgaggtcagaaaatggc
aagccggttagagtgccgaaaccccttgttctggtcggagttcaaaatggagagaccagt
cctatggctaaaccgaggtcagaagaagttcaattacatattgaaaattacccaagcagc
gaggagaaagcaatccctgtcacgaggagcaataagagaagtataagacttcaactcttt
gctgaggaagtccaggaaggtcacaagaaagcaaactggagagccaataaagctgaaaaa
gaaagcattgttggaaagcaatctgaggaaactaaagatggagagttggatgatatgcca
tcacctaagaataaaagcatgacacaggcggctgaacaaaatggatgcatttatggtgat
gatttaggaggaatagaaaacatggagtctggtgagagaccaacaccaaatgctccatat
tccattgtcgaagtaccaaatactgacacttggtctgaagctagttctgcttgtaatgtc
gctgtggtcccgagctctacgagtccacatgaaaacactgtggtacctccaacacttgaa
cgccacaatccagcgaatcatctccctaacaatactcgcttggaaaccttgatgcgccag
acaaaatgtgctggcgctgaaaatgaggacgatgacagtgagctggacacggagcaactg
ctcaagagcttcaaagccactaaaaggaaatctttcaatcttggcggctcgaatgtaaaa
aggacccagggcttcggccaagaaaacgtgcaggtatccgaagaaaaggatagcaagcgt
gttggttctggtgttgcatctgtaaataatcagatgtacacaaaggaatctgaaatgaca
aaccaagaagcattgagagacaatgaaacctcttcttgctgtgatttcatatccccttcc
atctcaccttcccgaacacggaaaccagttgagaaagctgttcaagtggtggtagaagcc
tccatccctgatagcggttgttcaggtcaggatagctctttctccaggaataatgtcagt
agcgccctcactcccaataaagtgtcaaaacgcaaaatagaaagtcctaatctctccgct
gtgcctcgtgtagtagattctgggctccgcttcacagccgctgaacatgacgagttagat
gaaccctcaaagtactctcagatcacagagaagcagcttgatgctggcaaagggatggag
ataagagacgtgtgcaacgcaaatgccggtggaacacattcagtcaacactgctgaacat
ttcataaacacagagttctctttgactcccagcggcctccgtgacagctgtggtagcaga
gagctgagcgcccattcctccctcaagagcaaacccaagaagaggaagagggcccagagg
ctcgagtcttccccagagtcagtccgcagtgaagaggcattaccaactttgacagagatt
ttcggaacatcagcttctcgctctgctgtgacaaaggaccagggagactccggagaagct
agatgtgagggtgttacagttcctggagcacaacagatgagccgtccacctgcaagccac
agccccgactgtgttccaaccagccaatgctctgtggacctgtttggcacgcctgatgga
cgtgatgtcccagtgaatgatgtcggcacttcacagtttgaatcatcacaattttcaagc
gaagttcttgtcacacagcaaaagatagaaatgcagaatgagctggtgaggttgaagaag
ttgatggctctggtgaccaaggtgcttcaggagaaagaagacagtcctgcaaaagaagac
tcctcaaaaacagatcagagcagcaaaaccacaggccaagacacaaacagatccccattg
tgcaccaaggacacaggcccaggttcagaccaggaagctgttcaagaagtagagcgagag
cccagcacaagaccatctgatggagaaggggtcgccgagcccggtgtgtcggagacggaa
gtgcagcgctccacacacacagggccgggtgcaaaaggctccggaggctccaagactccc
agttcaagtccagcagccagaccattaaagagcaacggttcaccatcagatgggcaagaa
gacaaagaaaacaacactcctccgaaagacagaagcaaagctaagatggtgctagcctca
tctggattagcccccaatgaacagacaatggtgaaaaagtttgccaagcgacttggtggc
cgagtggtttcccaggttaccccggaggtgactcatgttataatgcacacagatgaacaa
ctggtatgtgagcgcacgctgaagtacttccttggcatcgcaggcaggaagtgggtggtg
agcttccagtggatttcagagtgcttcaaactaaagaaagtcttggatgagagtgccttt
gaagttggaggtgatgtggtgaatggacccgaccatcagggccccatgagagctcgaacc
actgaagacagtagcttactcatgaagggcttcaggttctgcttccaaggatctttcaca
gacatgacgacagatgaaatggagtggatggtggagctctgtggagcagctgtagtcaaa
gacccacttctcctcgacagtaaacagcagaagtcccgtcagcttgtcatcgtacagcct
ggatcggagtcgtcttcgtccacatacagcagtctgtctaaacaagctacagtcgtgact
cgtggttggctgttggataccgtggcaacctacaccctccaaaactacaataagtacaaa
acatga
DBGET
integrated database retrieval system
