Pseudochaenichthys georgianus (South Georgia icefish): 117465539
Help
Entry
117465539 CDS
T09629
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117465539 (smchd1)
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117465539 (smchd1)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117465539 (smchd1)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117465539 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Glyco_hydro2_C5
Psb28
Motif
Other DBs
NCBI-GeneID:
117465539
NCBI-ProteinID:
XP_033964290
LinkDB
All DBs
Position
20:complement(17068527..17096010)
Genome browser
AA seq
1968 aa
AA seq
DB search
MEGGKVRRRIRIYDCRSKNGEKVNQEILETSGLDFKGFIKLLHRTFGIRSNETFVLATTD
RAVLDSKIFDELQDDSTLHLLKQKHQALAAATEENINFTPHYDTLIQSGTYEYWASRGQN
PLPYSLAELIDNALSATAKNQGVRKIEIRMMFDDTLGKPAVIVFDNGCGMTSKQLKNWAV
YRLSKFTRDVGSYGSEGEGYVRPDPVPRSLNSDISFFGVGGKQAVFHIGDSVRMISKPYG
SPDVHEMVISKQDFEKKVKNKEDVYSGIIRNRKPGDFSHVKTNDERFLHNLILEESGKEK
FTAVVITGVFPDHIAFLKQDIKVWTRQLAEVYHYYIHGVNGKEMRDSSADSDCHPEIKIM
ISLRDKPPVVMDLREVENDIQTMYIKSAVDTFEFKATTAQDGGTVDGLIRYHPFLYDRET
YPEDPNAVQAPDDEDDGDNEPGVLHQERRKRPIFDCFWNGRLIPYTTVSEFDWCAQSKGV
KELAECYSRISGVLFSDDRFPVSTNKLTFMELELKLKHRDTFFTRIVKGQKQRGNIQKDF
TQWLKNCHEKWDKQVKFLNFKKTITRTELPVKRMQYPWATFTSIEWDGKIYSKGQLVKSQ
KTQPILYGSVVRFLLYGQHEEDVFATGGEVEICMEPKAFHDKIKTIPISKIDKNTTSEAI
QRNIDNDLAKLPECLSVSWPEGDPWLEGGARPAGTPLGPLSINIMNKKGESISQMPAVGQ
GAGKRLIIDLKVFQHGNKPGQKKEVLSHATPTSAKFFWFKKIEMLTGLGEYTLILRTLIN
ENKADSFGGTELPSYKLNFTIKEGKAESFVIGTMSSSLRVGMPFDIPLQIKDGYDHPTVP
PPDLKPILKCSGLTSLNFDKTESSGTTLYIRRVKASGSVLNYLQPKTYDLRVTLPGLTQN
TETIKFSLLPGTAHSIHVTPEDKPIKVDNGKPILFNIEIHDEAGNITANSKQIVRCEVQG
YPGVATDCSSSGAGQLMIKPVNLKIIKGQPEKLHVQFEMPSQKKIKPVVRELEVVPSKRV
CRMEICSKDDENLVLTDNEKILWLAGGLMENLFYKLYDEADRDVPLTAEIASKIKVNWTG
DVNLRDLVQGKLPDLKVPYQVQEERFFQVSYQDQNVSVSFHIKPQPDEPNRLKATLLKST
VKLGEVIPGNISLELVDQYDNVTKTLSSDSKNHMAVKAEGLDESAITFKWQESSSSVLVM
GVQFRSGTLGPREICFTYEKYEERVIVKVTAGVPAQLKLVSGPVQPLQVLNDQGIDAPFV
VQLCDEWGNPCSDQRVVVQLKSSPQALKVKSSVVSQPVNVEGKASFTVTSLSGPKGYYQL
DFKGSLDRKPIPGPSVNITITPDPNKPVSLSVVYDNNATFPAGGVFPVFSVTVVSDEGSP
ITTNPAAASMLLWKGVQSGRIPPKTATELKCSKPMENQKNDRFYFRDKEIPEQVGKHTVQ
FSLRLEGAKFLCSEQITINVVANQPVKLGPASQPPTPVVSYSKALANRTLVENMTLRIMD
SSGNPTGEDLNGKVVISIKNCSGDGNKTIPLFEGKTTFLEISLEEGKAHVGRLALTENSP
GENGSAYTLLFTPEGPMVPPTLAPFELPFHFYNDADNQRKMSELSKKKDDLTTAVHADKE
LFNTYGQLLSVLTSHHIAASHKETSIRKELHRRNMETAQTIPHFDRLITEKRAELEKIMK
TRRRVCSLQDHYKGQQDVLGMVGHLAFVQDDHAAWVISWHIQGDMDCVITKTTEAAKRIY
DDTRGRQQVMALDSVFVHPGNRPLPHMGSGCMLFDPPGNPVYARDLLLYTEDRDRDMAFK
NILGETILIDDLDSANNYRKAVVQKKKPCPTILTRQGDRVSSRGKFGGRNNKAPPIDTLK
VFGAPLPQHYFLLKDHIDLLTQQRSALEKVDQAAKDRDLHLNDMKSPEMLRKAQEMEERK
KQLEEIERQLVSTPGRPLKRALDNAGEPSGINPKRSSRDPRLKSTIPT
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaggaaaagtacgcagaaggattcgtatttacgactgccgctccaaaaatggg
gagaaagttaaccaggaaatactggaaacgagtggtttggacttcaaaggctttattaaa
cttctgcaccggacatttgggatccgttcaaatgaaacatttgtgttggccacaacagac
agagcagtcctggattctaaaatatttgacgagcttcaggatgacagcaccctccacttg
ttgaaacagaagcaccaagctctggctgcggcgacagaagagaacatcaactttactcct
cactatgatacgctgatacagagtggcacctatgagtactgggctagcaggggacagaac
ccattgccatactcacttgctgagctgatcgacaacgctctttcagccacagctaaaaac
caaggagtgaggaagatagaaatacgcatgatgtttgatgacactctcgggaaacctgca
gtgattgttttcgataacggatgcgggatgacctctaaacagctcaaaaactgggctgtg
tacagactctctaagtttaccagggatgtcggctcctatggaagtgagggtgaaggatat
gttcggcctgatcctgtccctcgcagtctcaacagtgatatatccttctttggagttgga
ggaaaacaggctgttttccacattggagactcagtcaggatgatcagtaaaccatatggc
tccccggatgttcatgagatggttatttccaaacaagactttgagaaaaaggtgaagaac
aaagaggatgtttacagtgggatcattcgaaacaggaagcccggcgacttttcacatgtg
aaaacaaatgatgagcgcttccttcataacctcatcctagaggaatccggcaaggaaaag
ttcacggctgtggtcattacaggagtctttcctgatcacatcgcttttctaaaacaggat
atcaaagtgtggacgagacagctggctgaagtataccactactacattcatggagtcaat
ggaaaggaaatgagagacagctccgcagactcggattgtcaccctgaaataaaaatcatg
atcagtttacgtgacaagcctcccgttgtgatggatcttagagaggtggaaaacgacatt
cagactatgtacataaaatcagctgtggacacgtttgagtttaaggccaccactgcacaa
gatggcggcacagtggatggactcattcggtatcatcccttcctgtatgacagggagact
taccctgaggaccctaatgctgtgcaagcccctgatgatgaagatgatggtgataatgag
cctggagtcctgcatcaggaaagaaggaaaaggccgatatttgactgtttctggaacgga
cggctcataccttacaccacagtgtctgagtttgactggtgtgctcagagtaaaggagta
aaggagcttgcagagtgttacagtcggatttcaggggtgctcttctctgacgacagattc
ccagtcagcaccaacaagctcaccttcatggaactggagctgaaactgaagcacagggac
actttcttcacacgcattgttaagggacagaaacaaagaggtaacattcagaaggacttc
acgcagtggctaaagaactgccacgagaagtgggacaagcaagtgaagttccttaacttc
aagaagaccatcacacgaactgaattgcctgttaagagaatgcagtatccctgggcgaca
ttcacctccatcgaatgggacggcaaaatatactcaaaaggccaacttgtgaagtctcag
aaaacgcagcccattctctatggcagcgtggtgcgtttcttgctgtatggacaacatgaa
gaagatgtctttgccacagggggagaggtggaaatttgtatggaacccaaagcatttcac
gacaagatcaagaccatacccatttccaagattgacaagaacaccacttccgaagccatc
cagagaaacattgacaatgacctagccaagcttccagagtgtctgagcgtgagctggcct
gaaggagacccctggctagagggtggcgctcgcccagctgggactccattagggccactc
agcatcaacataatgaacaagaaaggagagtctatatcccagatgccagcagttggccag
ggagccgggaaaagactcattattgatctcaaagtctttcagcatggtaataagcctggt
caaaaaaaagaagtcttaagtcatgctacccctacttcagcaaagtttttctggttcaaa
aagattgagatgctgaccggcctgggggagtatactctgatactgaggactcttatcaac
gagaacaaggccgacagctttgggggcacagagctcccaagctacaaactcaacttcacc
atcaaagagggaaaggctgagagttttgttattggtacaatgagctccagtcttcgcgtg
ggaatgcccttcgacattccactgcagataaaggacggttacgaccaccccacagtgcct
cctccggatctcaaacctatactcaaatgcagtggcctgacttcactcaatttcgacaaa
acggaaagcagtgggacgacgttgtacatcagacgtgtcaaagcaagtggaagtgtcttg
aactacctacaaccaaagacatatgatctgagagtgaccctgccgggcttgacgcaaaac
acagagactatcaagttcagtcttcttcctggtactgcacactccatccacgtgacacca
gaagacaaaccaatcaaagtagataatggaaaacctatcttgtttaatattgagatccac
gatgaggcaggaaacatcacagctaactccaaacagatcgttcgatgcgaggttcagggg
tatccgggagtggctactgactgcagcagctcaggagccggacagctcatgataaagccc
gtaaacttgaaaataattaagggacaaccagaaaagctccatgttcaatttgagatgccc
agtcagaagaaaatcaagccggtggtgagggagctggaggtggtgccgagcaaaagagtc
tgccgcatggagatctgcagcaaggacgatgagaacttggttctcacggacaacgaaaag
atactctggctggctggaggcctgatggaaaacctcttctacaaactgtacgatgaggct
gatagagacgttccccttacggctgaaatagcctccaagataaaggttaactggacaggc
gatgtaaatctgagagatttggtccaggggaagctgccggacctaaaggtgccctatcag
gtgcaggaggagcgcttcttccaggtgtcctaccaagaccagaatgtgtcagtctccttc
cacatcaaaccgcagcctgatgaaccaaaccggctgaaagcaactctactgaaaagcaca
gtgaagctcggggaagtcataccaggaaacatcagcttggagcttgtggaccagtatgat
aatgtaacaaagacgctttcctccgactctaagaaccacatggcagtgaaagctgagggt
ctggacgaatcggccatcaccttcaaatggcaggagagcagcagttctgttctggtgatg
ggggtgcagttcaggtcggggactcttggccccagagagatctgcttcacctacgagaaa
tatgaggagcgcgtcatcgtaaaagtgaccgctggagtcccggcacagcttaaactagtc
agtgggccagtgcagcctctgcaggtgttgaatgaccaaggcatcgacgcaccgtttgtt
gtccagctgtgtgacgagtgggggaacccctgctcggaccagagggtggtggttcaattg
aagtcgtcaccacaggcactgaaggtgaagtcatctgttgtttcacaacctgtgaacgtg
gaagggaaagcctctttcactgttaccagtttgagcggaccaaaggggtactatcagctg
gattttaaagggtccctcgaccgcaaacccatccctggtccctcagtgaatatcaccatc
actcctgatcccaacaaacctgtgagcctgtccgtggtgtacgacaacaatgcaacgttt
cctgcaggaggcgtcttcccagtcttctctgtgacggtggtgtctgatgaaggaagcccc
attaccaccaatcctgctgctgcgtccatgctgctgtggaagggagtgcaatcaggaaga
attccaccaaaaacggccactgagctgaaatgcagtaaacccatggagaaccagaagaac
gaccgtttttactttagagataaagagatcccagaacaagttggaaaacacacggtccag
ttttctctacgactggaaggagctaaattcctgtgcagtgaacagatcactataaatgtg
gtggccaatcaacctgtcaaactgggacccgcctctcagccacccaccccagttgtttcc
tacagtaaggctttagccaaccgaaccttggtggagaatatgactctgaggataatggat
tcttctggaaacccaacgggggaagaccttaacgggaaggtggtcatttctataaagaac
tgcagcggagacggcaacaaaaccatccctctgtttgaaggcaaaaccacatttttggaa
attagcttggaagaaggaaaggcacatgtcggcaggctggctctcacggagaacagcccc
ggggagaatggaagtgcatacaccctcctcttcacacctgaagggccgatggttcccccc
accctggccccctttgagctgcccttccacttctacaatgatgcagacaaccaacggaaa
atgtctgagctgtccaagaagaaagatgatctcaccactgctgttcatgcagataaagag
ttatttaacacttatggacaactccttagtgtgctgacctctcatcacatcgctgcaagt
cacaaagagacttcgattagaaaggagcttcacaggaggaacatggaaacagcacaaacc
attccacattttgacagactcataactgagaagcgtgctgaacttgaaaagataatgaaa
acacgcagaagagtttgctccctccaggatcactacaaggggcagcaggatgttttggga
atggtcggccacctggccttcgtgcaggacgatcatgctgcgtgggttatctcctggcac
atccagggggacatggactgtgtcatcaccaaaaccactgaagcagcgaagaggatctat
gacgacaccaggggccggcagcaggtcatggccctcgacagtgtttttgtgcaccctggc
aacagaccgttgccgcacatggggagtggctgcatgctctttgatccccctggaaacccg
gtctacgccagagacctgctgctgtacaccgaagaccgggaccgtgacatggcttttaaa
aacatcctcggagagacaattctgattgatgacctggactctgctaacaactacagaaag
gcggtggtgcagaaaaagaagccatgtcccaccatcctgaccaggcagggggacagggtc
agctccaggggcaagtttggaggaagaaataacaaagccccaccaatcgacacattaaaa
gtgtttggagcccccctcccacagcattactttttacttaaggaccacatagacctgctc
actcaacaacgctcagctctggagaaggtggatcaggcagcgaaggatcgtgaccttcac
ttaaatgacatgaagtctcctgaaatgctgagaaaggcgcaagaaatggaggagagaaag
aagcagctggaagagattgagagacaactcgtgtcgaccccaggcagaccattgaaacgg
gctcttgataacgctggagagccgtccggcatcaatcccaagagatcgagcagagatcca
cgcctgaagtccacaattccaacctga
DBGET
integrated database retrieval system
