Photobacterium ganghwense: FH974_11845
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Entry
FH974_11845 CDS
T07175
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03030
DNA replication
pgh03410
Base excision repair
pgh03420
Nucleotide excision repair
pgh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FH974_11845 (ligA)
03410 Base excision repair
FH974_11845 (ligA)
03420 Nucleotide excision repair
FH974_11845 (ligA)
03430 Mismatch repair
FH974_11845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgh03032
]
FH974_11845 (ligA)
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_11845 (ligA)
Enzymes [BR:
pgh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FH974_11845 (ligA)
DNA replication proteins [BR:
pgh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FH974_11845 (ligA)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FH974_11845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FH974_11845 (ligA)
MMR (mismatch excision repair)
DNA ligase
FH974_11845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FH974_11845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QSV13423
LinkDB
All DBs
Position
1:complement(2601411..2603426)
Genome browser
AA seq
671 aa
AA seq
DB search
MSHDIQQQLAELREQLAYHGYRYYVEDNPEIPDAEYDRLMQELLALEAEHPELITTDSPS
QRVGGQPLAAFTQIQHEIPMLSLDNAFDDQELMAFEKRMKDRLPDAASLTYCCEPKLDGL
AVSLMYENGILVQAATRGDGTTGENITENVRTIRAVPLRLRGEGWPRRLEVRGEVFMPKQ
GFEDLNEKARKKGEKTFVNPRNAAAGSLRQLDPRITATRPLHFYAYSVGVVEGMELAESQ
YQRLVQLKNWGLPMCPEVRQLNNIQEVIAYYQDIGDKRQSLPYEIDGVVIKVDAIELQQQ
LGFVARAPRWAIAYKFPAQEELTVLRNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVMIGDTVVIRRAGDVIPQVASVVTSRRPADAQPIVFPQTCPVCDSHVERVE
GEAVTRCSGGLICRAQRKEALKHFVSRKAMDVDGCGEKVIEQLIEREMVTTPADLFKLSA
GVVTVLDRMGPKSAQKLVDSFAASKETTLPRFLYSLGIREVGEATAANLANYFETLENLE
NATEEQLMKVPDVGAIVAAHVYNFFREEHNLSVIRELLEVGIHWPAIEKPDEDAELPLDG
KTVVLTGTLSQLSRSDAKAALQKLGAKVTGSVSKKTDLLVAGEAAGSKLAKAQELGIEIW
DEQTLINVISR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagccatgatattcagcagcagctggctgagctgcgtgaacaacttgcttaccacggt
taccgttattacgttgaagacaacccggagattccggatgcagaatacgatcgccttatg
caggagctgttggcactggaagctgaacatcctgagctgatcaccaccgattccccaagc
caacgtgtcggtggacagcctttagccgctttcactcaaatccagcatgagatccctatg
ttgtcgctggacaatgcatttgatgatcaggagctgatggcgtttgaaaaacgcatgaaa
gatcggctaccggatgccgcatcattgacgtactgctgtgagccgaagctggacggtctg
gcggtgagcctgatgtatgagaatggcatactggttcaggctgcgacccgtggtgacggt
acaaccggtgaaaatattaccgaaaatgtacgtacgatccgtgctgttcctctccgtctt
cgtggcgaaggatggcctcgtcgtctggaagtgcgcggtgaagttttcatgccgaagcag
ggttttgaagatctgaacgagaaggcccgcaagaaaggcgaaaaaacttttgtcaaccca
cgtaatgcagctgcaggcagtctgcgtcagttggatcctcggatcacggcaactcgcccg
cttcatttttatgcttactctgtcggtgttgttgagggcatggagctggcagagagccag
taccagcgtcttgtccagttgaaaaactgggggctgccgatgtgtccggaagtcagacag
ctgaataacattcaagaagtcattgcttactaccaggatattggtgacaagcgtcagtca
ctgccatacgaaattgatggtgtcgtgatcaaggtggacgctattgagctacagcagcaa
ctgggttttgttgcgcgagcccctcgctgggcaattgcctataaattcccggcgcaggaa
gagctgacagtactcagaaatgttgaatttcaggttggccgaactggtgccattactccg
gtagcaaaactggaaccggtatttgtcgggggggtaaccgtcagtaacgcgacccttcac
aatgctgacgaaattgagcggctgggtgtgatgatcggcgataccgtggttattcgccga
gcgggtgatgtgatccctcaggttgcatcggttgtaacaagtcgccgtccggcagatgct
cagccaatcgtattcccacaaacgtgcccagtttgtgattcacatgtcgagcgtgtcgaa
ggtgaagcagtaacccgttgctctggtgggctgatctgccgcgcgcagcgtaaggaagca
ctaaagcatttcgtgtcacgcaaagcaatggatgttgatggctgcggcgaaaaagtcata
gagcagttgatcgaacgggaaatggtgacgaccccggcggatttgttcaagctgtcggcg
ggggttgtcacggtgctggatcgtatggggcctaaatccgcacagaagttagtcgattca
tttgcggcctcaaaagaaaccacactgccccgtttcctttactctttgggaatccgtgaa
gtaggagaggcgacagcggcaaacctggcgaattactttgaaacgctggagaatctcgag
aatgccactgaagagcagttaatgaaggtgcctgatgtaggggctattgttgctgctcat
gtttataacttcttccgtgaggaacacaacctcagtgtgatccgagaattgcttgaggtg
gggattcactggccagctattgaaaaacccgatgaagatgctgagttgccattggatggc
aaaacggtggtattgacaggtaccttatctcagctgagtcgctctgatgccaaagccgca
ctgcagaagttaggggcaaaggtaacggggagtgtttcaaagaaaaccgatttgctggtg
gctggtgaagcggctgggtcaaaattggcaaaagcacaggagttgggcatcgaaatttgg
gatgagcaaaccctgataaacgtcatttctcgttaa
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integrated database retrieval system
