Pteropus vampyrus (Indian flying fox): 120588040
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Entry
120588040 CDS
T07511
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgig03036
]
120588040 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pgig03400
]
120588040 (SMCHD1)
Chromosome and associated proteins [BR:
pgig03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120588040 (SMCHD1)
DNA repair and recombination proteins [BR:
pgig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120588040 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
DUF3447
Motif
Other DBs
NCBI-GeneID:
120588040
NCBI-ProteinID:
XP_039701096
LinkDB
All DBs
Position
Unknown
AA seq
2001 aa
AA seq
DB search
MAAAGGGGPSVGTGQGGGGDGCRTVYLFDRREKESELGDQVVQVEERSDYAGFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLHSVNQLLLTATKERIEFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRKIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITNDDE
RFLHYLISEEKEKNSFTAVIITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEKR
TSKEGGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTATDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKGARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDRFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRSDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTVKTLPLYYGSIEKFFLYGDHDGEVYATGGEVQIAMEPRALYDETRT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGPSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVVNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTSQLINDIQPVLEASGLSLQYEEITKGPNCVIRGVTAKGLVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPVYTVDCSSSGTSILSGSAIQVQNIKKDQTLKAKIEIPSCKDVAS
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHL
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPNSLSTLAIAGIGLDK
SQLKTTFQENTQSISVRGIKFTPGPPGNKHLCFTWREFSDLIRVQLISGPPAKLLLIDWP
DLKVSIPVINGRELQNPLIVQLCDQWDNPAPIPQVKISLIKGNNLKLTPSNQQHKTDERG
RANLGVFSVNAPRGEYTMQIKAIYNKTTIEGPTIKLMVLPDPEKPIRLNVKYDKDASFLA
GGVFTDFLITVISEDDSIIKNINPAHISMKMWKLSNNGNRPPANAEIFSCNKIKDNDKED
GCFYFRDKAVPNKMGIYCIQFGLMDKTNTLNSEQILVDVLPNQPVKLVPKIQPDTPAVSN
VHSVTNRTLVKDLHLIITDEYNNQTGIDLVGTVIATIKGSDEEDTDTPLFIGKVKTLQFP
FVKGSTEITSLVLAENSPGKDSTEYYIVFEPQLPALSRTLKSYILPFMFSDDVKKQQQMQ
AFTKKKDELSKYIGMYRSVFETSKQLIDEMKCQVEGAKLKEVQLRNELKTHNIDIPITQQ
MPHIETLLKRKLSEQEELKKKPRRSCTLPNYTKGSGNVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGEQIDLLQQYRNALDKLNNLTE
DLNSQLEYLQSPEMKKKKQELDEREKNLKLIEQKLGMTSTHKCSDSLRHPAKVEITDCPV
PLKRMRREATRQNRSVTKTDV
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggactggacagggcggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgtgagaaagagtcggagctcggcgaccag
gtggtgcaggtcgaggagcgctcggactacgcggggttccgtgcctctgtgtgccagaca
cttggcatttcacctgaagagaagtttgttattacaacaacaagtagaaaagaaattacc
tgtgataattttgatgaaactgttaaagatggagttactctatacctgctacattcagtc
aatcagttattactaacagctacaaaagaaagaattgaattcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgccgaattaattgacaattcattgtctgctacttctcgtaacactgggattaga
aaaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaattgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccagtgcca
gtgccacgcagtttaaacagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaatcaatatat
agtggatatattagaaacagaaagccatctgattctgttcatattacaaatgatgatgaa
cgatttctgcattatcttatctcagaagagaaagaaaaaaatagctttactgctgtgatt
attacaggagtacaaccagaacacatacagtacttgaaaaattatttccatctttggaca
agacagttagcgcatatttatcattactatattcatggtccaaaaggaaatgaaaaacgt
acatcaaaagaaggtggacctttcaacaacattgatatcgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaacacagcaactgatagttttgagttcaaagctcatgttgaaggagacggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgacgattgtttcatacttgagaaa
ggagcaagagggaaaagaccaattttcgaatgtttttggaatggacgactaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gaatgctacaatagaatatctggtgcattatttactaatgacagattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaaatatgacaaacaaataaaatttacactttttaaaggaataatt
acacgttctgatcttccttctaaaaagcagggcccctgggccacatactcagcaatagaa
tgggatggaaaaatatacaaagcgggacagctggtcaagacagtcaagacacttcctctc
tattatggaagcatagaaaagttttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaagttcaaattgcaatggaacctcgagcactgtatgatgaaacaagaact
gtaccaattgcaaagctggataggacagttgctgagaaagctgtaaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattagacctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggagaagcaatgcaaaaacttccaggaccaagtcatggagggtcaaagaaa
ctcctcgttgagctcaaagttatattacactcttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattacacattgaaattacaagttgtagttaatgaaagtaacgcagacact
tatgctggaagaccactaccatctaaagcaattaaattttccgttaaagagggtaagccg
gagaaattttcatttggtcttctcgatcctccttttcgtgttggagttccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaataaatgatattcaacca
gttcttgaagcaagtggtttatctttacaatatgaagaaataaccaagggaccaaattgt
gtaattcgaggtgttacagctaagggccttgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacaaattttgaaaattagattacta
ccaggtccccctcgtcgattgaaagtgaaacctgattctgaaattttggttatagaaaat
ggaacagccttcccatttcaggtagaagttttggatgaatcagacaatattacagcacag
ccaaaattgattgttcattgtaagttttcaggtgcacctaaccttccagtctacactgtg
gattgcagtagttctggaaccagtattttatcaggatctgcaattcaagttcagaatatt
aaaaaagaccagacccttaaagctaaaattgaaatacccagttgtaaagatgtggcatct
gtggagaagacaattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaagttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccattta
acatcagctttagcagagaaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgttat
tgccaagtttcatttcaagatgatcatgtatctttggaaagtgcatttacagtaagaccc
cttcccgatgaacctaaacatctaaaatgtgagttaaaaggtgggaaaacagtacagatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcaatatggaaatcagatt
caagcattttcaccaaactctttatctaccttggcaattgctggaattggacttgataag
tcacagttgaaaactacttttcaggaaaatacacaaagtataagtgtaagaggcatcaaa
tttactccaggtcctcctggaaataagcatctttgttttacttggcgtgagttttctgac
cttattcgagtgcagctaatttctggaccaccagctaaacttcttcttatagactggcca
gatttaaaggtgtccattccagtaattaatggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctataccacaggttaaaataagtctaata
aaaggtaacaatttaaagctcactccttcaaatcaacagcataaaacagatgaaaggggc
agggcaaatttgggagtattcagtgttaatgcccctagaggagaatatacgatgcagatt
aaagccatctataacaagactaccatagaaggacctacaattaaattaatggttcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtgttttcactgattttttgattactgttatttctgaagatgatagtatcattaaa
aatattaatcctgcacatatttccatgaaaatgtggaagctctctaacaatgggaaccga
ccaccagcaaatgcagaaatatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcagttcctaataaaatggggatatattgtatccag
tttggtttaatggataaaacaaatactcttaacagtgaacagattttagttgatgttcta
cctaatcaacctgtgaagttagtacctaaaattcagccagatacaccagctgtttcaaat
gttcactcagttaccaataggaccttggtcaaagatctacatcttattatcacggatgag
tacaacaatcagactggaattgatttggttggcactgtaatagctaccattaaaggttct
gatgaggaagatactgatacaccactctttatcgggaaagttaaaacacttcaatttccc
tttgtgaaaggttcaactgaaatcacgagtctagtactggcagaaaatagccctggaaag
gatagtactgaatattatattgtatttgagcctcagctgccagctttgtcaagaacatta
aaatcatacatcctaccatttatgttttctgatgatgttaagaagcaacaacaaatgcaa
gcatttaccaaaaagaaggatgaattatctaaatatatcggaatgtatagaagtgtattt
gaaaccagcaaacaacttattgatgaaatgaagtgccaggttgaaggagcaaaattaaaa
gaggtccagttgcgaaatgaactaaaaacacataatattgacattcctataacacaacag
atgccacacattgaaacacttttgaaaagaaagttgtcagaacaggaagaactaaagaaa
aaacctagaagatcatgtactcttccaaactatactaaaggcagtggaaatgttttggga
aagattgcacatctggcacaaatcgaagatgatagagctgcaatggttatttcctggcat
ctggcaagtgatatggattgtgttgtcaccctgaccactgatgctgcgcgtcgtatctat
gatgaaactcaaggtcgtcagcaggtgttgccccttgattctatttacaagaagactctt
ccagactggaaaagacctctacctcattaccgaaatggaaaattatactttaaacccatt
ggagatccagtctttgcccgagatttgttaacatttccagataacatagaacattgtgaa
acagtatttggtatgctgttaggagacaccattattttggacaatttggatgctgccaat
cattatagaaaagaggttgttaaaattacacattgtcctacactgctcaccagagatgga
gatcgaattcgaagcaatggaaagttcgggggccttcagaataaagctcctccaatggac
aaacttcggggaatggtatttggagccccagtaccaaaacagtgcctggtcttaggggaa
caaatagatcttcttcagcagtatcgtaatgctctggacaagttgaacaatctgactgag
gaccttaatagtcaattagagtaccttcagtctcctgaaatgaagaagaaaaaacaggaa
cttgatgaacgagaaaaaaatctgaaattaatagagcaaaaactaggtatgacttccaca
cataagtgtagtgattcattgcgtcatccagcaaaggttgaaataacagattgtccagtt
cctcttaaaagaatgagaagagaagctacaagacaaaataggtctgtaaccaaaacagat
gtgtga
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integrated database retrieval system
