Panacibacter ginsenosidivorans: FRZ67_08310
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Entry
FRZ67_08310 CDS
T06131
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin03030
DNA replication
pgin03410
Base excision repair
pgin03420
Nucleotide excision repair
pgin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRZ67_08310 (ligA)
03410 Base excision repair
FRZ67_08310 (ligA)
03420 Nucleotide excision repair
FRZ67_08310 (ligA)
03430 Mismatch repair
FRZ67_08310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgin03032
]
FRZ67_08310 (ligA)
03400 DNA repair and recombination proteins [BR:
pgin03400
]
FRZ67_08310 (ligA)
Enzymes [BR:
pgin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRZ67_08310 (ligA)
DNA replication proteins [BR:
pgin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRZ67_08310 (ligA)
DNA repair and recombination proteins [BR:
pgin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRZ67_08310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRZ67_08310 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRZ67_08310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRZ67_08310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QEC67296
UniProt:
A0A5B8V995
LinkDB
All DBs
Position
2004886..2007012
Genome browser
AA seq
708 aa
AA seq
DB search
MYTTEQTKELQTATHTFLKHAASVEDIDALRNVLRFHEYRYYVLNDPLLADVEYDKLYKQ
LEHIEKQHPELVAKDSPTQRVGSTLNAAFPTVQHLVPMLSLDNSYNAEDLYDFDRKAREL
TGLDIIEYCVEPKFDGASISLIYENDILVRGATRGDGVEGEDITTNIKQIKSIPLSAPFS
KFGVQQVEIRGEIILTKDVFKKYNESLAEQGLPPLANPRNAASGSLRQKDPKNVAKRNLD
AFLYHISYYTTRDGHVQSSDGIQNDNLPKHNKYLQTHGGSLDMLWECGFRAPKKEKLILN
GIDEVIKHVHDFEEMRDTLPYEIDGMVVKVNDFALQDKMGMTTHHPRWAIAFKFKARQAT
TKLKAVEFQVGRTGAVTPVAKLEPVHIGGVTVSSISVHNEDYIKEKDLKIGDNVLIERAG
DVIPQIVKSLPELRTGHEHNIHFPKKCPVCASELFKEEGEAVWRCINIDCPAQVVERIIH
FVSKDAMDIKNFGEANVRKFYELGLLKDVPGIYKLDFAAISKLEGFGKKSIDNLQTAIEA
SKEQPLHRLVYGLGIRFVGETTAKTLANAVDDINDFTNKTEEDLQQLEDIGVKVAQSIYR
FFHNEQNLKILDELRALGLQMKNQKKTSTGDSTLKEQTFLFTGTLTKLKRSDAEAMVEDH
GGKIVSGVSSKLNYLVVGEDAGSKLEKAKKINTIRIISEDEFLSLINK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccactgaacaaacgaaagaattacaaaccgctacccatacatttttaaaacat
gctgcctcagttgaagatattgatgcgcttagaaatgtattacgcttccatgaatatcgc
tattacgttcttaatgatccgcttcttgcagatgtggagtacgacaagttatataaacag
cttgaacacatagaaaagcaacatcctgaactggtagccaaagactctcctacgcaaaga
gtaggcagcacattaaatgcagcattccctactgttcagcatttggtgcccatgcttagt
ctcgataatagttacaacgcagaagacctttacgattttgaccgcaaagcaagagaactt
acgggacttgatataattgaatattgtgtggaaccaaagttcgatggtgcaagcatttca
ctcatttatgagaatgatatacttgtgcggggtgccacacgtggtgatggtgtggaaggt
gaagatattaccaccaacatcaaacaaataaaatcaattcctttatctgcaccattttca
aaattcggtgtgcaacaggttgaaatacgtggcgagatcattcttacaaaagatgttttt
aaaaagtataatgaaagccttgcagagcaaggcctgccaccacttgctaatccacgcaat
gcagccagtggaagccttagacaaaaagatcccaaaaatgtagcgaaaagaaatcttgat
gcttttctctatcacatcagttattatacaacaagagatggtcatgttcaatcgagtgat
ggaatacaaaatgataatcttccaaagcataataaatatttgcaaacacatggtggctct
ttagatatgttatgggaatgcggttttcgtgctccaaaaaaagaaaagcttatcctgaat
ggcattgatgaagtaataaaacatgtacacgattttgaagaaatgcgcgacacacttcct
tatgaaatagacggcatggtagttaaagtaaacgactttgcattacaggataaaatgggc
atgaccacgcatcatccacgctgggcaattgcatttaaattcaaggcaagacaagccaca
acaaaattaaaagcagtagaattccaggttggcagaacaggtgcggtaacgcctgttgca
aaacttgaacccgttcacattggcggtgtaacagtttccagtatttctgtacacaatgaa
gattatataaaagaaaaagacctcaaaattggcgataatgtattgatcgaaagagcaggt
gatgttataccgcaaattgtaaaatcactaccggaattaagaaccggtcatgaacacaat
attcattttccaaaaaaatgtcctgtttgtgcaagtgaattatttaaagaagagggtgaa
gctgtctggcgttgcataaacattgattgccctgcacaggttgtggaacgcatcatacat
ttcgtaagcaaagatgcaatggacattaagaattttggagaagccaacgtgcgtaaattt
tacgaactcggattgcttaaagatgtgcccggcatttataaattagactttgcagcaata
agcaaactggaaggctttggaaaaaaatcaattgataatttacaaactgctatagaagct
tcaaaagaacaaccattgcatcgtttggtgtatggtctgggcattcgttttgttggcgaa
actactgcaaaaacattggccaatgctgtggatgacatcaacgattttacaaataaaaca
gaagaagacttgcagcaactggaagatattggcgtaaaggttgcacaaagtatttatcgt
ttttttcataatgagcagaacctgaaaatacttgatgaactaagagcattaggtttacaa
atgaagaaccagaagaaaacatcaacaggtgattcaacacttaaagaacaaacttttctt
ttcaccggcacacttactaaacttaaacgcagcgatgctgaagcaatggtagaagaccat
ggcggtaaaattgtaagcggcgttagcagtaaactcaattaccttgttgtgggcgaagat
gcaggtagcaaattagagaaagcaaaaaagataaacaccattcgcattatttcagaagat
gaatttttaagtctcatcaataaatga
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