Paraburkholderia ginsengisoli: I6I06_02820
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Entry
I6I06_02820 CDS
T07246
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgis
Paraburkholderia ginsengisoli
Pathway
pgis03030
DNA replication
pgis03410
Base excision repair
pgis03420
Nucleotide excision repair
pgis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6I06_02820 (ligA)
03410 Base excision repair
I6I06_02820 (ligA)
03420 Nucleotide excision repair
I6I06_02820 (ligA)
03430 Mismatch repair
I6I06_02820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgis03032
]
I6I06_02820 (ligA)
03400 DNA repair and recombination proteins [BR:
pgis03400
]
I6I06_02820 (ligA)
Enzymes [BR:
pgis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6I06_02820 (ligA)
DNA replication proteins [BR:
pgis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6I06_02820 (ligA)
DNA repair and recombination proteins [BR:
pgis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6I06_02820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6I06_02820 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6I06_02820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6I06_02820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
MctB
DUF4874
5_3_exonuc
Hint
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QQC64431
UniProt:
A0A7T4N385
LinkDB
All DBs
Position
1:633235..635301
Genome browser
AA seq
688 aa
AA seq
DB search
MARTPVSSPAPSAPAERAVWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHP
DLIVPDSPTQRVGGEAASGFEQVVHDLPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP
VPVDYAAELKFDGLAISLRYADGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVP
RVLDVRGEVLMFKRDFERLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAY
GIGVLDGIEMPATHSELLDWYKELGLPVNGERAVVQGAEGLLGFFHAVGEKRESLPYDID
GVVYKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEP
VFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPDDAREFVMP
TQCPVCGSNIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ
NLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTA
KDLAKHFGSLDPIMDASVDALLEVNDVGPVVAEAIHQFFAEEHNRTVIEQLRAPGKVTWP
EGPPAPKAPQGVLAGKTVVLTGTLPNLSREAAKEMLEAAGAKVAGSVSKKTDYVVEGADA
GSKLAKAEELGIPVLDEDGMHKLLEGQS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggccagaacccccgtctcctcccccgcacccagcgctccggccgagcgcgccgtttgg
ctgcgcgcggaactcgaacgcgcgaactacgcgtactacgtgctcgatcagccggacctg
cccgacgcggagtacgacaagctgttcaaggaactggagcgtatcgaggccgagcatccg
gacctgatcgtgccggactcgccgacccagcgcgtgggcggcgaagcggcgagcggcttc
gagcaggtcgtgcacgacctgcccatgctgtcgctgaacaacggtttcgcggacgaggac
atcgtcgcgttcgacaaacgcgtcggcgatgcgctcggcaagaacgcgagcgagccgccg
gtgccggtcgattacgcggccgagttgaagttcgatggcctcgcaatctcgctgcgttac
gccgacggcgtgttcgtgcaggcgtccactcgcggcgacggcaccaccggcgagaacgtc
acggaaaatgtccgcacgatccgctccattccgctcaagctcaaaggcaaacgcgtgccg
cgtgtgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgacttcgaacgtctgaac
gaacgtcagcgcgcggccgaacagcgcgaattcgccaatccgcgcaacgcggcggcgggc
agtttgcggcagctcgattccaagatcaccgcacagcggccgctgtcgtttttcgcgtat
ggcatcggtgtgctcgatggcatcgagatgccggccacgcatagcgaactgctcgactgg
tacaaggaactcggcttgccggtgaacggcgaacgggcggtggtgcagggcgccgaaggc
ttgctgggctttttccacgcggtcggcgagaagcgcgagtcgctgccgtacgacatcgac
ggcgtggtctacaaggtcaaccggcgcgacgagcaggacgcgctcggcttcgtgtcgcgc
gcgccgcgctttgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaagctcgtc
gcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcggctggagccg
gtgttcgtcggcggcgcgacggtcaccaatgccacgctgcacaacgaagacgaagtgcgt
cgcaaggacatccgcatcggcgacacggtgatcgtgcggcgtgccggcgacgtgattccc
gaagtggtgagcgcgctgctcgaccgccgtccggacgacgcccgcgagttcgtgatgccg
acgcagtgcccggtgtgcggctcgaacatcgaacggctgcccgacgaggcgattgcgcgc
tgtaccggcgggctgttttgcccggcgcagcgcaagcaggcgctatggcacttcgcgcag
cggcgcgcgctcgacatcgacggactcggcgagaagatcatcgaccagctggtcgagcag
aatctggtgcgcacgccggccgatctgttcaacctcggcttcgcgacgctcgccgaactg
gaccgcttcgcggaaaagtccgcgcagaacctgctcgactcgctcgaaaaggccaagcac
accacgctcgcgcgtttcatctacgcgctcgggattcgccacgtgggtgagtcgaccgcg
aaagacctggcgaagcatttcggttcgctcgatccgatcatggacgcgtcggtcgacgcg
ctgctggaagtcaacgacgtggggccggtggtcgccgaggcgatccatcagttcttcgcc
gaagaacacaaccgtacggtgatcgagcaactgcgcgcgccgggcaaggtcacgtggccg
gaagggccgcccgcgccgaaagcgccgcagggtgtgctggccggcaagaccgtggtgctg
accggcacgttgccgaacctgtcgcgcgaagcggcgaaggaaatgctcgaagcggcgggc
gcgaaagtggcggggtccgtgtcgaagaaaacggactatgtggtggagggggccgacgcg
ggcagcaaattggcgaaggccgaggaactcggcatccccgtactcgacgaagatggtatg
cataagctcctggaggggcagtcatga
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