Pedobacter gandavensis: QG516_06555
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Entry
QG516_06555 CDS
T09013
Name
(GenBank) chondroitinase family polysaccharide lyase
KO
K08961
chondroitin-sulfate-ABC endolyase/exolyase [EC:
4.2.2.20
4.2.2.21
]
Organism
pgj
Pedobacter gandavensis
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
QG516_06555
Enzymes [BR:
pgj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.20 chondroitin-sulfate-ABC endolyase
QG516_06555
4.2.2.21 chondroitin-sulfate-ABC exolyase
QG516_06555
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lyase_catalyt
Lyase_N
Lyase_8
Lyase_8_C
Motif
Other DBs
NCBI-ProteinID:
WGQ11314
LinkDB
All DBs
Position
complement(1573621..1576674)
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AA seq
1017 aa
AA seq
DB search
MNRLFFVLLFICCQTMGSFAQTQVDVCESSVPKKWTAVNGSLSMSSNHFKLGKQSIKWDW
NGAGKSMLTISDEGLKAVVGNPRSTFVVWIYNEKPVNDQLVFKFGTKDKTMSSFNFKLNF
KGWRTAWVMYHRDMAGKPAAEMNQLSISAPASLNKGSLFIDQLILTASINPRSPMRDEQV
PFVNPDGDKAANAHWTSLYAFNRMPQYLPLPGKLSTSIQAELDQIGKRYREQLLLPAGKT
STKNALTELEQAYAYWNISRAGGSIGGRPVFSTNDVELVSFSPDEKLKEINRLSGIKRYT
QLMLQIAQAYHAPGFVNDKERLGQLFIDLLDHLEDQGWAYGSGMGALHHLGYNLASYYPA
CLLMKDLIKQQGKLDRTFKSMAWFSGLGRSLQLPDQLPASNIDVFNTLLGGMLASVLILD
DGPEKLQYLQSYSKWLSKNIIPDHTIEGAFKPDGAVFHHGNLYPAYGIGGYAGIAPILYV
LSGTSFRVEPAAHESLKHSLLMMHYYTHPYQWPLSVSGRHPTGSGRIADIAYAYMAMAGS
PDGQLKTDTLMASIYLMLNKGKQNKWMTAFKNSQIKPIGYTSGHWNLNYGLFDLHRREDW
LLSLRGHNRFFVSHESYPGANVYGRYLGYGHLEVLFPETKTGDGSNFRDEGWDWNNIPGT
TTLHLPLAQLKANIINADDDSGIEEMLISDEPFAGGTSFEKNGLFAMKVHGHDKYDMGSF
RATKSWFMFNHLVVSLGSGIKNTRADYPTETTLFQNYLNDPEAVIQLDGKEISAFPYTSK
GDAGKVLTLIDNRNIGYYIPDGGNAVFSKSLQVSRDQKDSRATSGNFAKLVLQHGNAPAD
AGYQYAMLIKTNQPALDSLALTMKSGKPVYKVLQQDTAAHIVWYAPEQLVGLAIFGTQQK
LSDSLVMGNSRPCLLMYQQKGERLSMSVTDPDLAFYEGPDDSPVMADGKRKEVSIYSRKW
YRSPSKPSLVKLLIKGKWAAKSAQDNVEAIVQPDGNTLISVPCADGIATNIEWIKKN
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtttgtttttcgttttattatttatttgctgccagaccatgggcagttttgcg
caaactcaagttgacgtttgtgaaagcagcgttccaaaaaaatggactgctgtgaatggc
agcttatcgatgagcagcaatcattttaaattagggaagcaatctataaaatgggactgg
aatggggctgggaaaagcatgctgacgatttctgatgaaggtcttaaggctgttgtggga
aacccgagaagtactttcgtggtctggatttataatgaaaaaccagtgaatgatcagctg
gtattcaaattcggaacaaaggataaaaccatgagcagttttaactttaagcttaatttc
aaaggctggagaactgcctgggttatgtatcacagagatatggctgggaaaccagctgca
gaaatgaatcagctgagcatatcggcccctgccagcttgaataagggtagcctttttatc
gatcagctcatccttacagccagcataaatccacgttccccgatgcgggatgagcaggta
ccatttgttaatccagacggagataaagcggcaaatgcacattggacctccttatatgca
tttaatagaatgccgcaatatttgccattaccagggaagctgagcacaagcattcaggcg
gagcttgaccagattggcaaaaggtatcgggagcagctgttgctgcctgcagggaaaact
tcgacaaaaaatgctttaactgaattggagcaagcgtatgcctattggaacatcagccgc
gctggaggaagcattggtggccggccggtattttccacaaatgatgtggagctggtttcc
ttttctccggatgaaaaactcaaggagatcaaccgtttatctggcatcaagcgctatacc
caattgatgctgcagattgcccaggcttatcatgctcctggctttgtgaatgacaaagaa
agactggggcaactatttatagatcttttggatcacctggaagatcagggctgggcctat
ggcagcgggatgggggcattgcaccatcttggctataaccttgccagttattatccagct
tgtttactgatgaaagacctgattaagcagcaaggtaagctggaccggacttttaaaagt
atggcttggtttagcggtttaggacgcagtttacagcttccagatcagttgccggcctcc
aatattgacgtatttaataccttgcttggaggaatgctggcttcggttttaatcctggac
gacggccctgaaaaattgcagtatctgcagagttattccaaatggctttccaaaaatata
ataccagatcacacgattgaaggcgcttttaaacctgatggtgccgtttttcaccatggt
aatctttacccggcctacggtataggcggttatgccggaatcgcaccgatcctttatgtc
ctgagcggcacctcttttcgggtagaacccgctgcccatgaaagtttaaagcatagtttg
ctgatgatgcattattatacccatccctaccaatggccattgagcgtttccgggcgccat
ccaacaggcagcgggcgcattgcagatattgcttatgcctatatggcgatggcaggttcg
ccagatggacagttgaaaacagatactttaatggcttcgatttacctgatgctgaacaag
gggaaacagaacaaatggatgactgcttttaagaatagtcagattaagcccatagggtat
accagcggtcattggaaccttaattatggtttgtttgatcttcaccgccgcgaggattgg
ctgctcagcttgcgaggacataaccggttttttgtaagtcatgagtcttatcctggcgcc
aatgtatatgggcgatacctgggctatgggcatctggaggtcttatttccggagactaaa
acaggtgacggcagtaattttagagatgagggctgggactggaataacattccgggaaca
actacccttcatcttcctctagcgcagctgaaggccaacatcatcaatgcagatgacgat
agcggcatagaagaaatgctgatttctgacgagcctttcgcaggtggtaccagctttgag
aaaaatggcctatttgcgatgaaagttcatggccatgataaatatgatatgggcagcttc
agggctacgaaatcctggtttatgtttaatcacctggtggttagtttaggttccggaatt
aaaaatacgcgggctgattatcccacagaaaccactttgttccagaattacctgaatgat
cctgaagcggtgatccagctggatggaaaggagatcagcgcatttccttacactagtaag
ggggatgcggggaaagttttaaccctgattgacaaccgcaacattgggtattatattcct
gacggaggaaatgctgtgttcagtaagtctttgcaggtttccagggatcagaaagatagc
cgggcaacgagcggcaattttgcaaagttggttctgcagcatggaaatgcacctgcagat
gcaggatatcagtatgcgatgctaatcaaaacaaatcagcccgcactagatagtctggct
ttaacgatgaaaagcgggaaaccagtgtacaaggttttgcagcaggatactgcggcacat
atcgtatggtatgctccggagcagctggttggtctggcaatttttgggactcagcaaaaa
ttatcagatagcctggtgatgggcaacagcagaccatgtttgctgatgtatcagcaaaag
ggggagcggctgtctatgtcggttaccgatccagatcttgctttttatgagggaccggat
gatagtccggtgatggcagatggtaaaaggaaggaagtcagcatttattcccgtaaatgg
taccgttctccatcaaaaccatctctggttaaactgctgattaaagggaaatgggcagcg
aaatcggctcaggataatgtggaagcgatagtacagccagatggaaatacactgatttct
gtaccttgtgcggatgggattgccaccaacattgaatggattaaaaagaattaa
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