Pedobacter gandavensis: QG516_10210
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Entry
QG516_10210 CDS
T09013
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03030
DNA replication
pgj03410
Base excision repair
pgj03420
Nucleotide excision repair
pgj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QG516_10210 (ligA)
03410 Base excision repair
QG516_10210 (ligA)
03420 Nucleotide excision repair
QG516_10210 (ligA)
03430 Mismatch repair
QG516_10210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgj03032
]
QG516_10210 (ligA)
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_10210 (ligA)
Enzymes [BR:
pgj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QG516_10210 (ligA)
DNA replication proteins [BR:
pgj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QG516_10210 (ligA)
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QG516_10210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QG516_10210 (ligA)
MMR (mismatch excision repair)
DNA ligase
QG516_10210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QG516_10210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
Nlig-Ia
PTCB-BRCT
HHH
Auto_anti-p27
Dna2
RNA_ligase
HVO_2753_ZBP
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WGQ12011
LinkDB
All DBs
Position
2454300..2456312
Genome browser
AA seq
670 aa
AA seq
DB search
MPLMEIKDKMEALVKELNQHSYNYYVLAMPTIADYEFDKKLAELEQLEKAHPEFADPNSP
TQKVGGEITKNFTTVAHRWPMLSLGNTYNEQDLRDFDERVRKTIGDQFEYVCELKFDGLS
ISLTYENNKLVRAVTRGDGTKGDDVTTNIKTISNIPHQLKNETVPPLFEIRGEIFMHRAA
FDRLNREREELGEVQYANPRNFAAGTVKMQDSKEVARRPLDCFLYSLNTDKNYFKTHWES
LESLKSWGFNVCEHTELSSTIDDVLAFVHKWEEQRFKLSYDIDGIVIKVNSYAQQQELGF
TAKSPRWAISYKYKAQEVETILEKVTYQVGRTGAVTPVANLKPVQLAGTTVKRATLHNAN
EIERLDLHEGDTVFVEKGGEIIPKIIHVNLEKRKPGALKIHYLTQCPECNTPLIRKEGEV
AFYCPNDEACPPQIVGRIQHFISRKAMNIDGLGDETIETFYQKGLVARISDLYTLHERSE
DLKTLERFGDRSIENMLKGIENSKQMPFEKVLFGLGIRYVGETVARKLAVGTKNIDKLMT
ATLEELVAIDEIGQRIAESILEYFAKPEHIHQIELLKSYGLQFEVVEKEISLQSDKLTGK
TFVISGVFENYSREELKEIIESNGGKILSGISAKLNYLVAGDNMGPSKLEKANKLNVPLI
SQDDLLALLK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttatggagatcaaagacaaaatggaagcattggttaaggagcttaaccaacat
agttacaattattatgtattggcaatgcctaccattgcagattacgagttcgacaagaaa
ttagcagagctggagcaattagaaaaagcacatccagaattcgcagatcccaactcccct
acccaaaaagttggtggggagatcaccaaaaactttacaaccgttgcccaccgatggcca
atgctttcactgggaaatacctataacgaacaagacttacgcgattttgacgaacgcgtt
cggaaaacaattggagatcagtttgaatatgtatgtgaacttaagtttgatggactttcc
atcagcttaacctacgaaaacaacaaattggttcgtgccgttacccgcggtgatggtacc
aaaggcgatgatgtaaccaccaatatcaaaaccatcagtaacatccctcatcagttaaaa
aatgaaactgttcctccgctatttgagatcagaggggagatatttatgcaccgtgctgcc
ttcgatcgactcaacagagagcgtgaagagcttggagaggtacaatatgccaaccctaga
aattttgccgcaggaaccgttaaaatgcaggattctaaagaagtagccagacgtccatta
gactgtttcctatattccctgaataccgataaaaactatttcaaaacgcattgggaaagt
ttagaaagcttaaaaagctggggttttaatgtgtgcgagcatactgagctgagcagtacc
atcgatgacgtacttgcttttgtacacaaatgggaagaacagcgtttcaaactttcttat
gatattgatggaatcgtgatcaaagtaaacagctatgcgcagcagcaggaattgggcttt
acagccaaatctccacgctgggcaatttcttataaatacaaagcacaggaagtagaaacc
atcctggagaaagtaacttatcaggtaggacgtactggtgcagtgacccctgtggctaac
ctgaaaccggttcagctggccggaacaacagtaaaaagagctaccctgcacaatgcaaat
gagatcgagcgactagatcttcatgaaggtgataccgtatttgtagaaaaaggtggagag
atcattcctaaaatcatccatgtaaacctggaaaaacgtaagccaggagctttaaaaata
cattacctgacgcaatgcccggaatgtaataccccattgatcagaaaagaaggagaagtg
gctttctactgccctaatgacgaagcttgtccgccgcaaatcgtaggtagaatccagcat
tttatcagccgcaaggcgatgaatattgacggattgggtgatgaaactattgaaaccttt
tatcaaaaaggactggttgcccgcatcagcgatctttacaccctgcatgaaagatcagaa
gatttgaaaacattggaacgcttcggagatcgttctattgaaaatatgctgaaaggaatt
gaaaactccaagcagatgccttttgaaaaagtccttttcggattaggaatcagatatgtc
ggagaaactgttgcaagaaaactggctgttggaactaaaaatatcgacaagttaatgact
gcaaccctggaagaactcgttgcaattgatgaaatcggacaaagaattgcagaaagcatc
ctagaatacttcgcaaaaccggaacacatccaccaaattgagcttttaaagtcttatgga
ctgcagttcgaagtggtagaaaaagaaattagcctgcaaagtgacaaattaactggaaaa
acattcgtaatttcgggagtttttgaaaattacagtagggaagaactcaaagagataatt
gaaagcaatggtggtaagatcctgagcggcatttccgcaaaactcaactaccttgttgcg
ggtgataatatgggaccttccaaattggaaaaggcaaataaattgaatgtccccctgatt
tcacaggatgacctattagcgttattgaagtaa
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